Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E8M06_RS11040 Genome accession   NZ_CP039462
Coordinates   2259523..2260617 (+) Length   364 a.a.
NCBI ID   WP_044673842.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2254523..2265617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS11225 - 2255245..2255415 (-) 171 WP_168800266.1 hypothetical protein -
  E8M06_RS11015 (E8M06_11025) - 2255660..2256286 (-) 627 WP_136581672.1 Rha family transcriptional regulator -
  E8M06_RS11020 (E8M06_11030) - 2256300..2256527 (-) 228 WP_136581673.1 helix-turn-helix transcriptional regulator -
  E8M06_RS11455 - 2256677..2257345 (+) 669 WP_239073412.1 helix-turn-helix transcriptional regulator -
  E8M06_RS11030 (E8M06_11040) - 2257833..2258999 (+) 1167 WP_136581674.1 site-specific integrase -
  E8M06_RS11035 (E8M06_11045) yaaA 2259137..2259520 (+) 384 WP_136581675.1 S4 domain-containing protein YaaA -
  E8M06_RS11040 (E8M06_11050) recF 2259523..2260617 (+) 1095 WP_044673842.1 DNA replication/repair protein RecF Machinery gene
  E8M06_RS11045 (E8M06_11055) guaB 2260886..2262367 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  E8M06_RS11050 (E8M06_11060) trpS 2262599..2263624 (-) 1026 WP_136581676.1 tryptophan--tRNA ligase -
  E8M06_RS11055 (E8M06_11065) - 2263979..2264851 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42216.36 Da        Isoelectric Point: 7.4360

>NTDB_id=317977 E8M06_RS11040 WP_044673842.1 2259523..2260617(+) (recF) [Streptococcus suis strain WUSS351]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRINFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=317977 E8M06_RS11040 WP_044673842.1 2259523..2260617(+) (recF) [Streptococcus suis strain WUSS351]
ATGTGGCTAGAACGACTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TTATCGATGTCGAGCTAGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTAACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATTAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442