Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E8M06_RS07555 Genome accession   NZ_CP039462
Coordinates   1530676..1531272 (-) Length   198 a.a.
NCBI ID   WP_024399909.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525676..1536272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS07530 (E8M06_07540) - 1527150..1527818 (-) 669 WP_136581441.1 ABC transporter ATP-binding protein -
  E8M06_RS07535 (E8M06_07545) - 1527828..1528904 (-) 1077 WP_105105299.1 ABC transporter permease -
  E8M06_RS07540 (E8M06_07550) - 1528906..1529286 (-) 381 WP_136581442.1 OsmC family protein -
  E8M06_RS07550 (E8M06_07560) - 1529525..1530571 (-) 1047 WP_024399910.1 D-alanine--D-alanine ligase -
  E8M06_RS07555 (E8M06_07565) recR 1530676..1531272 (-) 597 WP_024399909.1 recombination mediator RecR Machinery gene
  E8M06_RS07560 (E8M06_07570) pbp2b 1531281..1533350 (-) 2070 WP_136581443.1 penicillin-binding protein PBP2B -
  E8M06_RS07565 (E8M06_07575) vga(F) 1533442..1534827 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  E8M06_RS07570 (E8M06_07580) vicX 1535085..1535888 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21607.71 Da        Isoelectric Point: 4.5456

>NTDB_id=317949 E8M06_RS07555 WP_024399909.1 1530676..1531272(-) (recR) [Streptococcus suis strain WUSS351]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSVCGNLTDQDPCGICQDSSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=317949 E8M06_RS07555 WP_024399909.1 1530676..1531272(-) (recR) [Streptococcus suis strain WUSS351]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCTTGGCTGCCAAGAGGGATT
TGACCTATTGTTCGGTTTGTGGCAATCTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATAGCAGTCGTGACCAGTCG
ACTATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49