Detailed information NTG0317876

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: E8M05_RS11125
• Genome accession: NZ_CP039457
• Coordinates: 2134825..2135919 (+)
• Length: 364 a.a.
• NCBI ID: WP_003067011.1
• Uniprot ID: E0PGK0
• Organism: Streptococcus pasteurianus strain WUSP067
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2129825..2140919

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E8M05_RS11100 (E8M05_11090)	pgsA	2130254..2130808 (-)	555	WP_003066999.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
E8M05_RS11105 (E8M05_11095)	-	2130817..2131758 (-)	942	WP_003067002.1	helix-turn-helix domain-containing protein	-
E8M05_RS11110 (E8M05_11100)	yfmH	2131822..2133111 (-)	1290	WP_048791415.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
E8M05_RS11115 (E8M05_11105)	yfmF	2133112..2134356 (-)	1245	WP_041972964.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
E8M05_RS11120 (E8M05_11110)	yaaA	2134445..2134822 (+)	378	WP_013852366.1	S4 domain-containing protein YaaA	-
E8M05_RS11125 (E8M05_11115)	recF	2134825..2135919 (+)	1095	WP_003067011.1	DNA replication/repair protein RecF	Machinery gene
E8M05_RS11130 (E8M05_11120)	-	2135981..2136847 (-)	867	WP_013852367.1	GRP family sugar transporter	-
E8M05_RS11135 (E8M05_11125)	guaB	2137087..2138568 (-)	1482	WP_003067014.1	IMP dehydrogenase	-
E8M05_RS11140 (E8M05_11130)	trpS	2138827..2139849 (-)	1023	WP_013852368.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41782.80 Da
• Isoelectric Point: 6.8963

>NTDB_id=317876 E8M05_RS11125 WP_003067011.1 2134825..2135919(+) (recF) [Streptococcus pasteurianus strain WUSP067]
MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDAKELLVSGILQRSSGT
VPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQR
NTYLKTAEKVDTDFLAVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIHYLSSVSFQEKDDIKPNFLK
ALQKNQQRDIFKKNTSVGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIRTVTGDYPILLLDDVMSELDNYRQ
TELLKMIIDKNVQTFITTTSLDHLSQLPDDLKIFTVNQGNIQEN

Nucleotide

• Length: 1095 bp

>NTDB_id=317876 E8M05_RS11125 WP_003067011.1 2134825..2135919(+) (recF) [Streptococcus pasteurianus strain WUSP067]
ATGTGGATTCAAAAAATAACGTTAAAAAATTATCGTAACTATCTGACTAGTGAGCTTGAATTTTCTCCTGGACTTAATGT
TTTCATCGGAAAAAACGCTCAAGGAAAGACAAATTTCTTAGAAGCAATTTATTTCCTTTCTCTTACCCGCAGCCACCGCA
CACGAACAGACAAAGAGTTGATTCATTTTGATGCCAAAGAACTTCTGGTTTCTGGTATTTTACAACGTTCAAGTGGTACT
GTTCCTTTAGATATTAGTCTTTCAAGTAAGGGACGTGTTACAAAAGTTAATCATCTAAAACAAGCTAAGTTATCAGACTA
TATTGGTGTAATGACCGTTGTTCTTTTTGCACCTGAAGATTTACAACTCATCAAAGGCGCTCCAAGCCTTCGTCGAAAAT
TTATTGACATTGATTTAGGGCAAATAAAGCCGATTTATTTAGCTGATTTGTCTAATTATAACCACGTGCTAAAACAGCGT
AATACTTATCTTAAAACGGCTGAAAAAGTTGATACTGATTTTTTAGCTGTGCTTGATGAGCAATTAGCTGATTTTGGTAG
CCGTGTCATGGAACATCGTTTAGATTTCATTTCTAATTTAGAAAAAGAAGCCGACCGCTATCATTATGCCATTTCAAACG
GCATTGAACATCTTAGTATCCATTATCTGTCATCTGTTTCCTTCCAAGAAAAGGATGACATTAAGCCAAACTTCTTAAAA
GCTTTACAGAAAAATCAGCAGCGTGATATTTTCAAAAAAAATACAAGTGTTGGTCCTCACCGCGATGATTTGGAATTTTT
CATCAATGATATGCCAGCAAATTTTGGCAGCCAAGGTCAGCACCGTAGCTTAATCTTATCACTAAAAATGGCTGAAATTG
AGTTAATAAGAACAGTAACTGGTGATTATCCTATTTTGCTTTTAGATGATGTCATGAGCGAGCTTGATAATTACAGACAA
ACCGAACTCTTAAAAATGATTATTGATAAAAACGTTCAAACCTTCATTACAACAACGAGTCTCGACCACCTATCGCAGCT
TCCGGACGACTTAAAAATCTTTACAGTTAATCAAGGTAACATTCAAGAAAATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: E0PGK0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.11	100	0.651
recF	Bacillus subtilis subsp. subtilis str. 168	46.705	95.879	0.448