Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   E8M05_RS06610 Genome accession   NZ_CP039457
Coordinates   1249475..1249915 (-) Length   146 a.a.
NCBI ID   WP_061100410.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP067     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244475..1254915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS06595 (E8M05_06585) - 1244652..1245629 (-) 978 WP_117479603.1 alcohol dehydrogenase catalytic domain-containing protein -
  E8M05_RS06600 (E8M05_06590) rcrQ 1245895..1247667 (-) 1773 WP_058692202.1 ABC transporter ATP-binding protein Regulator
  E8M05_RS06605 (E8M05_06595) rcrP 1247657..1249471 (-) 1815 WP_003065252.1 ABC transporter ATP-binding protein Regulator
  E8M05_RS06610 (E8M05_06600) rcrR 1249475..1249915 (-) 441 WP_061100410.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  E8M05_RS06615 (E8M05_06605) - 1250088..1250498 (-) 411 WP_136596451.1 peptide deformylase -
  E8M05_RS06620 (E8M05_06610) - 1250495..1251004 (-) 510 WP_117479609.1 GNAT family N-acetyltransferase -
  E8M05_RS06625 (E8M05_06615) gdhA 1251281..1252630 (-) 1350 WP_003065263.1 NADP-specific glutamate dehydrogenase -
  E8M05_RS06630 (E8M05_06620) - 1252876..1253373 (+) 498 WP_003065265.1 DUF308 domain-containing protein -
  E8M05_RS11295 queF 1253429..1253920 (-) 492 WP_003065267.1 preQ(1) synthase -
  E8M05_RS11300 queE 1253933..1254646 (-) 714 WP_003065269.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17085.55 Da        Isoelectric Point: 9.3733

>NTDB_id=317841 E8M05_RS06610 WP_061100410.1 1249475..1249915(-) (rcrR) [Streptococcus pasteurianus strain WUSP067]
MHKKDPFSQFRDFINLAENRVHALAESHGVENLAGPQGFAVLYLHDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGF
IRVISSIEDKRYKQVVLTELGKSKAQNIQDFHDEMHRQILAGVDHEDLKISFRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=317841 E8M05_RS06610 WP_061100410.1 1249475..1249915(-) (rcrR) [Streptococcus pasteurianus strain WUSP067]
ATGCATAAGAAAGATCCGTTTTCACAGTTTAGGGATTTTATCAATTTAGCGGAAAATCGTGTCCATGCTCTTGCGGAAAG
TCATGGTGTTGAAAATCTGGCTGGTCCACAGGGATTTGCAGTGTTGTATCTCCATGATAATCCTGATAAAGAAATTTATA
TCAAGGATATTGAGAAGAGACTAAGAATTTCAAAGTCAGTAACTAGTAATTTGATTAAGCGCATGGAGAAAAATGGTTTT
ATCCGAGTTATTTCGTCAATAGAAGATAAGCGTTATAAGCAAGTGGTGTTGACTGAACTTGGAAAATCAAAGGCTCAAAA
CATTCAAGATTTCCATGATGAAATGCATAGACAAATCTTAGCTGGTGTTGACCATGAGGATCTCAAAATTTCGTTTCGCG
TCTTTGACCGCATTTTGAAAAATTTAGAAAACAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.643

97.945

0.555