Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   E8M05_RS03930 Genome accession   NZ_CP039457
Coordinates   721353..724595 (+) Length   1080 a.a.
NCBI ID   WP_003064118.1    Uniprot ID   E0PCT2
Organism   Streptococcus pasteurianus strain WUSP067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716353..729595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS03915 (E8M05_03910) pheS 717156..718199 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  E8M05_RS03920 (E8M05_03915) - 718235..718727 (+) 493 Protein_699 GNAT family N-acetyltransferase -
  E8M05_RS03925 (E8M05_03920) pheT 718798..721203 (+) 2406 WP_003064115.1 phenylalanine--tRNA ligase subunit beta -
  E8M05_RS03930 (E8M05_03925) rexB 721353..724595 (+) 3243 WP_003064118.1 ATP-dependent nuclease subunit B Machinery gene
  E8M05_RS03935 (E8M05_03930) rexA 724585..728217 (+) 3633 WP_003064121.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  E8M05_RS03940 (E8M05_03935) - 728327..729205 (-) 879 WP_003064124.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124109.58 Da        Isoelectric Point: 5.1310

>NTDB_id=317818 E8M05_RS03930 WP_003064118.1 721353..724595(+) (rexB) [Streptococcus pasteurianus strain WUSP067]
MKLLYTDIQYDMTEILVGEAVAQAEAGKRVFYIAPNSLSFEKERAVLELLRDEASFAITVTRFAQMARYFVLNEAQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLNLAELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNIYQAS
LDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPILLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELEILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=317818 E8M05_RS03930 WP_003064118.1 721353..724595(+) (rexB) [Streptococcus pasteurianus strain WUSP067]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAAATTTTAGTTGGAGAGGCAGTAGCTCAGGCAGAAGCTGG
TAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACGAGACGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTACCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTATACAAAGAATTAAAAACGGCTAACATGACTGTGCTTA
ATTTGGCAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGCC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCTACGCTTGAAAA
TGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATATTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCGGCTAAATTCCATGCGCAACCGCAGTATGTTGAAAGTTCTCAGAAATCTCACGAGGC
TTTTTCAAAATTATCAAAATTATTTGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCAAAAGCTATTCGTCATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTTGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCCAAGGAATTCACGAT
TGTTTATAAAGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACGTGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGCTGGATGACTGTTTGTCCTTGATTCGCAGCGGAATGTTAGCTG
CGCAGTACCGTGTAGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCGTTATTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAACGGATGC
CGAGGACATTGGTAATTATAAGGCCTTATTGTCTCGTGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGCATTGAATTG
CCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGAGCCGAT
TTTGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCATCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAAACAACGAATTTGGAAGACGATTTCAAATTTGTTTACGA
AGAAGATGAAGAAAGTCGTTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACAGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGTGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCAGAAATT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCAGAGCATA
TTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACAACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGAGATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCAGCAGAGC
AGATTAAGAAAGGGCATTTCTTGATTAATCCTTATAGTGAGGACGGTAAGTCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PCT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.074

100

0.441

Multiple sequence alignment