Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E8M05_RS03180 Genome accession   NZ_CP039457
Coordinates   570049..570645 (+) Length   198 a.a.
NCBI ID   WP_003063793.1    Uniprot ID   E0PCC8
Organism   Streptococcus pasteurianus strain WUSP067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565049..575645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS03160 (E8M05_03155) - 565083..565487 (-) 405 WP_003063787.1 DUF3267 domain-containing protein -
  E8M05_RS03165 (E8M05_03160) - 565899..566420 (+) 522 WP_048791210.1 transcription repressor NadR -
  E8M05_RS03170 (E8M05_03165) - 566617..567171 (+) 555 WP_048791211.1 hypothetical protein -
  E8M05_RS03175 (E8M05_03170) pbp2b 567856..569982 (+) 2127 WP_048791212.1 penicillin-binding protein PBP2B -
  E8M05_RS03180 (E8M05_03175) recR 570049..570645 (+) 597 WP_003063793.1 recombination mediator RecR Machinery gene
  E8M05_RS03185 (E8M05_03180) - 571080..572126 (+) 1047 WP_003063795.1 D-alanine--D-alanine ligase -
  E8M05_RS03190 (E8M05_03185) - 572228..572788 (-) 561 WP_013851594.1 folate family ECF transporter S component -
  E8M05_RS03195 (E8M05_03190) murF 573033..574397 (+) 1365 WP_048791492.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  E8M05_RS03200 (E8M05_03195) - 574494..575564 (+) 1071 WP_230321730.1 polymerase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21706.86 Da        Isoelectric Point: 4.5907

>NTDB_id=317808 E8M05_RS03180 WP_003063793.1 570049..570645(+) (recR) [Streptococcus pasteurianus strain WUSP067]
MLYPTPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDEDPCNICTDQTRDHS
VILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVNEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=317808 E8M05_RS03180 WP_003063793.1 570049..570645(+) (recR) [Streptococcus pasteurianus strain WUSP067]
TTGCTTTATCCAACACCTATCGCAAAGCTGATTGATAGTTTTACAAAATTACCAGGAATTGGTATAAAAACAGCAACACG
TTTGGCTTTCTACACGATTGGAATGTCAGATGAAGATGTGAATGAATTCGCCAAAAATTTATTGGCAGCTAAGCGTGAAT
TGACTTATTGTTCTGTTTGTGGGAATTTAACAGATGAAGACCCTTGTAATATCTGTACAGATCAAACTCGTGACCATTCC
GTTATTTTAGTGGTTGAAGATTCAAAAGACGTATCTGCTATGGAAAAAATTCAAGAGTATCATGGCTTGTACCATGTCTT
ACATGGCTTGATTTCACCAATGAATGGTGTCGGACCAGATGATATTAATTTGAAATCATTGATTACACGTTTAATGGATA
GTGAGGTCAATGAAGTGATTATTGCGACCAATGCAACCGCAGACGGTGAAGCAACATCTATGTATATCTCACGTGTCCTA
AAACCAGCAGGAATCAAGGTAACACGTTTAGCACGTGGACTGGCTGTTGGCTCAGACATCGAGTATGCCGACGAAGTCAC
ACTACTTCGTGCCATAGAAAATCGAACAGAATTGTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PCC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475