Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   E8M05_RS02085 Genome accession   NZ_CP039457
Coordinates   365994..367028 (+) Length   344 a.a.
NCBI ID   WP_048791316.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP067     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 360994..372028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS02060 (E8M05_02055) - 362223..363413 (+) 1191 Protein_343 IS110 family transposase -
  E8M05_RS02065 (E8M05_02060) - 363751..364134 (+) 384 WP_325052501.1 HAD hydrolase family protein -
  E8M05_RS02070 (E8M05_02065) - 364485..364787 (-) 303 WP_013851482.1 hypothetical protein -
  E8M05_RS02075 (E8M05_02070) - 364784..365203 (-) 420 WP_013851483.1 HIT family protein -
  E8M05_RS02080 (E8M05_02075) pptA 365267..365992 (+) 726 WP_013851484.1 ABC transporter ATP-binding protein Regulator
  E8M05_RS02085 (E8M05_02080) pptB 365994..367028 (+) 1035 WP_048791316.1 ABC transporter permease Regulator
  E8M05_RS02090 (E8M05_02085) ccrZ 367093..367887 (+) 795 WP_012961430.1 cell cycle regulator CcrZ -
  E8M05_RS02095 (E8M05_02090) trmB 367887..368525 (+) 639 WP_003063401.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  E8M05_RS11770 (E8M05_02100) - 369051..369528 (+) 478 Protein_351 hypothetical protein -
  E8M05_RS02110 (E8M05_02105) rimP 369781..370266 (+) 486 WP_172456429.1 ribosome maturation factor RimP -
  E8M05_RS02115 (E8M05_02110) nusA 370351..371541 (+) 1191 WP_043910362.1 transcription termination factor NusA -
  E8M05_RS02120 (E8M05_02115) rnpM 371561..371857 (+) 297 WP_003063410.1 RNase P modulator RnpM -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39784.87 Da        Isoelectric Point: 10.5816

>NTDB_id=317792 E8M05_RS02085 WP_048791316.1 365994..367028(+) (pptB) [Streptococcus pasteurianus strain WUSP067]
MKEVFQKRRSAFLGQCLKYLRYVFNDHFVLVLVFLTGFLMVQYSQLLRQFPSQTVVIDVILVLVILVLLSLGKIATYLEA
PDKLFYLPKEIEILQWLSQARRRAFVIWTIVQTAILVLLAPIFFKLGFSTVTFGILLLALAVVKWLVMKEKSKVFFSQGK
FSWDAAISYEAKRRQGVLKFFSLFTTVKGISASVKRRSYLDSLLGLVKKTHAKTWSNLYLRAFLRSSDYFALTLRLLALS
LLALIFISNRLVAVGLALVFNYLLLFQLLTLSQHFDYQYLTNLYPISEKQKAANLKTFLKKLSYLLSFLELLLTFSWQAA
GLLILVTVIITEWYLPYKINKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=317792 E8M05_RS02085 WP_048791316.1 365994..367028(+) (pptB) [Streptococcus pasteurianus strain WUSP067]
ATGAAAGAAGTTTTTCAAAAGCGCCGTAGTGCTTTTTTAGGGCAATGCTTAAAGTATCTTCGTTATGTCTTTAATGACCA
TTTTGTGCTAGTCTTGGTTTTCTTAACAGGTTTTCTGATGGTTCAATACAGCCAGCTGTTACGTCAGTTTCCAAGTCAGA
CAGTCGTTATTGACGTGATTTTGGTCTTGGTTATCCTTGTTTTGCTTAGCCTTGGGAAGATTGCGACTTATTTGGAAGCA
CCTGATAAATTGTTCTATTTGCCAAAAGAAATTGAGATTTTGCAATGGCTATCACAGGCAAGACGTCGTGCTTTTGTGAT
TTGGACAATCGTGCAAACGGCAATTCTTGTTTTATTAGCTCCCATCTTCTTTAAACTAGGTTTTTCAACGGTTACCTTTG
GCATTTTATTGCTTGCTTTAGCGGTTGTGAAATGGCTTGTAATGAAAGAAAAAAGCAAGGTATTCTTTTCTCAAGGAAAA
TTTTCATGGGATGCTGCCATTTCTTATGAAGCAAAACGTCGTCAAGGAGTGCTTAAATTCTTTTCACTTTTCACAACGGT
TAAGGGAATTTCAGCTAGTGTGAAACGTCGTTCGTACTTGGATAGTTTGCTTGGTTTGGTCAAAAAAACACATGCCAAAA
CATGGTCAAATTTATACCTACGTGCGTTTTTACGGAGTTCAGATTATTTTGCTTTAACCTTGCGATTACTCGCATTGAGC
TTGCTTGCGCTTATCTTTATTTCCAATCGCTTGGTAGCAGTTGGCTTGGCTTTGGTCTTTAATTATTTATTACTTTTTCA
ATTATTAACCCTATCCCAACATTTTGATTATCAATATTTGACCAATCTTTATCCAATTTCTGAAAAGCAAAAGGCGGCTA
ATTTAAAGACATTTTTGAAAAAATTATCGTATTTATTGAGCTTTTTGGAGTTGTTATTAACGTTTTCTTGGCAAGCAGCA
GGCTTATTGATTTTGGTAACGGTTATTATTACAGAATGGTATCTTCCTTACAAAATCAATAAGATGATTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.221

100

0.462

  pptB Streptococcus salivarius strain HSISS4

45.64

100

0.456


Multiple sequence alignment