Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E8M03_RS02300 Genome accession   NZ_CP039448
Coordinates   494111..494707 (+) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain VGC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489111..499707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M03_RS02270 (E8M03_02305) treR 490039..490767 (+) 729 WP_000977612.1 trehalose operon repressor -
  E8M03_RS02280 (E8M03_02315) - 491168..491268 (+) 101 Protein_441 hypothetical protein -
  E8M03_RS02285 (E8M03_02320) - 491407..491931 (+) 525 WP_001167833.1 GNAT family N-acetyltransferase -
  E8M03_RS02290 (E8M03_02325) dnaX 492000..493697 (+) 1698 WP_001109053.1 DNA polymerase III subunit gamma/tau -
  E8M03_RS02295 (E8M03_02330) - 493787..494104 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  E8M03_RS02300 (E8M03_02335) recR 494111..494707 (+) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  E8M03_RS02305 (E8M03_02340) - 494915..495011 (+) 97 Protein_446 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=317683 E8M03_RS02300 WP_000559156.1 494111..494707(+) (recR) [Staphylococcus aureus strain VGC1]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=317683 E8M03_RS02300 WP_000559156.1 494111..494707(+) (recR) [Staphylococcus aureus strain VGC1]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAAGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475