Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CFI14_RS10535 | Genome accession | NZ_CP032659 |
| Coordinates | 2305200..2305793 (+) | Length | 197 a.a. |
| NCBI ID | WP_050338058.1 | Uniprot ID | A0A241RQ54 |
| Organism | Lactiplantibacillus pentosus strain ZFM94 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2300200..2310793
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFI14_RS10520 (CFI14_10520) | gyrA | 2301143..2303695 (+) | 2553 | WP_230409408.1 | DNA gyrase subunit A | - |
| CFI14_RS10530 (CFI14_10530) | rpsF | 2304864..2305163 (+) | 300 | WP_003637271.1 | 30S ribosomal protein S6 | - |
| CFI14_RS10535 (CFI14_10535) | ssb | 2305200..2305793 (+) | 594 | WP_050338058.1 | single-stranded DNA-binding protein | Machinery gene |
| CFI14_RS10540 (CFI14_10540) | rpsR | 2305832..2306068 (+) | 237 | WP_003637273.1 | 30S ribosomal protein S18 | - |
| CFI14_RS10545 (CFI14_10545) | - | 2306245..2308257 (+) | 2013 | WP_120769446.1 | DHH family phosphoesterase | - |
| CFI14_RS10550 (CFI14_10550) | rplI | 2308271..2308723 (+) | 453 | WP_120769447.1 | 50S ribosomal protein L9 | - |
| CFI14_RS10555 (CFI14_10555) | dnaB | 2308739..2310169 (+) | 1431 | WP_088770332.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 21368.79 Da Isoelectric Point: 4.7453
>NTDB_id=317668 CFI14_RS10535 WP_050338058.1 2305200..2305793(+) (ssb) [Lactiplantibacillus pentosus strain ZFM94]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF
Nucleotide
Download Length: 594 bp
>NTDB_id=317668 CFI14_RS10535 WP_050338058.1 2305200..2305793(+) (ssb) [Lactiplantibacillus pentosus strain ZFM94]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCCAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCCAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.452 |
100 |
0.635 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.315 |
100 |
0.543 |