Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E9097_RS18530 Genome accession   NZ_CP039404
Coordinates   3675956..3676693 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 377323_2f     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3670956..3681693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E9097_RS18515 (E9097_18515) clpC 3671410..3673983 (-) 2574 WP_001592512.1 ATP-dependent chaperone ClpB Regulator
  E9097_RS18520 (E9097_18520) yfiH 3674113..3674844 (-) 732 WP_000040119.1 purine nucleoside phosphorylase YfiH -
  E9097_RS18525 (E9097_18525) rluD 3674841..3675821 (-) 981 WP_001592513.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E9097_RS18530 (E9097_18530) comL 3675956..3676693 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E9097_RS18535 (E9097_18535) - 3676814..3677805 (+) 992 Protein_3595 IS4 family transposase -
  E9097_RS18540 (E9097_18540) raiA 3678063..3678404 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E9097_RS18545 (E9097_18545) pheL 3678508..3678555 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E9097_RS18550 (E9097_18550) pheA 3678654..3679814 (+) 1161 WP_024232092.1 bifunctional chorismate mutase/prephenate dehydratase -
  E9097_RS18555 (E9097_18555) tyrA 3679857..3680978 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=317653 E9097_RS18530 WP_000197686.1 3675956..3676693(+) (comL) [Escherichia coli strain 377323_2f]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=317653 E9097_RS18530 WP_000197686.1 3675956..3676693(+) (comL) [Escherichia coli strain 377323_2f]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376