Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CFK27_RS13385 | Genome accession | NZ_CP032654 |
| Coordinates | 2922863..2923456 (+) | Length | 197 a.a. |
| NCBI ID | WP_050338058.1 | Uniprot ID | A0A241RQ54 |
| Organism | Lactiplantibacillus pentosus strain ZFM222 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2917863..2928456
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFK27_RS13370 (CFK27_13370) | gyrA | 2918806..2921358 (+) | 2553 | WP_230409408.1 | DNA gyrase subunit A | - |
| CFK27_RS13380 (CFK27_13380) | rpsF | 2922527..2922826 (+) | 300 | WP_003637271.1 | 30S ribosomal protein S6 | - |
| CFK27_RS13385 (CFK27_13385) | ssb | 2922863..2923456 (+) | 594 | WP_050338058.1 | single-stranded DNA-binding protein | Machinery gene |
| CFK27_RS13390 (CFK27_13390) | rpsR | 2923495..2923731 (+) | 237 | WP_003637273.1 | 30S ribosomal protein S18 | - |
| CFK27_RS13395 (CFK27_13395) | - | 2923908..2925920 (+) | 2013 | WP_120769446.1 | DHH family phosphoesterase | - |
| CFK27_RS13400 (CFK27_13400) | rplI | 2925934..2926386 (+) | 453 | WP_120769447.1 | 50S ribosomal protein L9 | - |
| CFK27_RS13405 (CFK27_13405) | dnaB | 2926402..2927832 (+) | 1431 | WP_088770332.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 21368.79 Da Isoelectric Point: 4.7453
>NTDB_id=317639 CFK27_RS13385 WP_050338058.1 2922863..2923456(+) (ssb) [Lactiplantibacillus pentosus strain ZFM222]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF
Nucleotide
Download Length: 594 bp
>NTDB_id=317639 CFK27_RS13385 WP_050338058.1 2922863..2923456(+) (ssb) [Lactiplantibacillus pentosus strain ZFM222]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCCAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCCAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.452 |
100 |
0.635 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.315 |
100 |
0.543 |