Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   CFK76_RS02395 Genome accession   NZ_CP032652
Coordinates   467229..467741 (+) Length   170 a.a.
NCBI ID   WP_035145013.1    Uniprot ID   A0A9N7J0G1
Organism   Latilactobacillus sakei strain LZ217     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462229..472741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS02355 (CFK76_02355) - 462442..462816 (-) 375 WP_011375004.1 hypothetical protein -
  CFK76_RS02360 (CFK76_02360) - 462913..463413 (+) 501 WP_016265379.1 VanZ family protein -
  CFK76_RS02365 (CFK76_02365) - 463504..464235 (+) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CFK76_RS02370 (CFK76_02370) comGA 464352..465242 (+) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  CFK76_RS02375 (CFK76_02375) comGB 465235..466242 (+) 1008 WP_061827023.1 type II secretion system F family protein Machinery gene
  CFK76_RS02380 (CFK76_02380) comGC 466239..466538 (+) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CFK76_RS02385 (CFK76_02385) comGD 466558..466962 (+) 405 WP_235596237.1 hypothetical protein Machinery gene
  CFK76_RS02390 (CFK76_02390) comGE 466949..467254 (+) 306 WP_016265375.1 hypothetical protein Machinery gene
  CFK76_RS02395 (CFK76_02395) comGF 467229..467741 (+) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  CFK76_RS02400 (CFK76_02400) - 467704..468042 (+) 339 WP_035145011.1 hypothetical protein -
  CFK76_RS02405 (CFK76_02405) - 468157..469176 (+) 1020 WP_235596233.1 class I SAM-dependent methyltransferase -
  CFK76_RS02410 (CFK76_02410) - 469198..470394 (+) 1197 WP_011374993.1 acetate/propionate family kinase -
  CFK76_RS02415 (CFK76_02415) - 470449..470907 (+) 459 WP_035145008.1 hypothetical protein -
  CFK76_RS02425 (CFK76_02425) - 471450..471815 (-) 366 WP_011374991.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19689.58 Da        Isoelectric Point: 6.9899

>NTDB_id=317586 CFK76_RS02395 WP_035145013.1 467229..467741(+) (comGF) [Latilactobacillus sakei strain LZ217]
MRLIGRPIKHSAFTLIEMVISMAILILTSQLLVATVGVLQKAIKVTQQQQNTINWHISTIQLDQFLADAYFTHHQDQDGS
KITFRKPDTNQSGEEAETVYYLKRMKNEMVVVSQLNGYMPLLGNLKQLQLDYQRPFVQIDATFTDQSRYQHEVFLEEQDE
QAKKKTIKTD

Nucleotide


Download         Length: 513 bp        

>NTDB_id=317586 CFK76_RS02395 WP_035145013.1 467229..467741(+) (comGF) [Latilactobacillus sakei strain LZ217]
TTGCGATTAATTGGACGACCGATTAAGCATTCAGCGTTCACGCTAATTGAAATGGTGATTTCAATGGCGATTCTAATCCT
GACGAGTCAGTTACTGGTGGCAACGGTGGGTGTTTTACAAAAGGCAATTAAAGTCACGCAACAACAGCAAAATACAATCA
ATTGGCATATCAGTACGATTCAGTTAGATCAGTTTTTAGCCGATGCGTATTTTACACATCATCAGGATCAAGATGGCTCC
AAAATCACTTTTCGAAAACCAGACACTAATCAGTCAGGGGAGGAAGCGGAGACTGTTTACTATTTAAAAAGGATGAAAAA
TGAAATGGTTGTTGTCAGCCAATTAAATGGGTATATGCCATTATTAGGCAACCTCAAGCAACTTCAACTTGACTACCAGC
GACCGTTTGTTCAAATCGATGCGACTTTTACGGATCAGAGTCGCTACCAACACGAAGTTTTCTTGGAGGAACAAGATGAA
CAGGCTAAAAAAAAGACGATTAAAACCGATTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-149)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Latilactobacillus sakei subsp. sakei 23K

98.235

100

0.982

Multiple sequence alignment