Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E4311_RS17240 Genome accession   NZ_CP039403
Coordinates   3496894..3497631 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 382634_2f     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491894..3502631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4311_RS17225 (E4311_17240) clpC 3492348..3494921 (-) 2574 WP_001592512.1 ATP-dependent chaperone ClpB Regulator
  E4311_RS17230 (E4311_17245) yfiH 3495051..3495782 (-) 732 WP_000040119.1 purine nucleoside phosphorylase YfiH -
  E4311_RS17235 (E4311_17250) rluD 3495779..3496759 (-) 981 WP_001592513.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E4311_RS17240 (E4311_17255) comL 3496894..3497631 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E4311_RS17245 (E4311_17260) - 3497752..3498743 (+) 992 Protein_3337 IS4 family transposase -
  E4311_RS17250 (E4311_17265) raiA 3499001..3499342 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E4311_RS17255 (E4311_17270) pheL 3499446..3499493 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E4311_RS17260 (E4311_17275) pheA 3499592..3500752 (+) 1161 WP_024232092.1 bifunctional chorismate mutase/prephenate dehydratase -
  E4311_RS17265 (E4311_17280) tyrA 3500795..3501916 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=317574 E4311_RS17240 WP_000197686.1 3496894..3497631(+) (comL) [Escherichia coli strain 382634_2f]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=317574 E4311_RS17240 WP_000197686.1 3496894..3497631(+) (comL) [Escherichia coli strain 382634_2f]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376