Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CFK78_RS00560 Genome accession   NZ_CP032633
Coordinates   114553..115113 (-) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei strain ZFM220     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 109553..120113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS00530 (CFK78_00530) rplA 110840..111529 (-) 690 WP_016265663.1 50S ribosomal protein L1 -
  CFK78_RS00535 (CFK78_00535) rplK 111628..112053 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  CFK78_RS00540 (CFK78_00540) - 112179..113036 (-) 858 WP_016265664.1 alpha/beta fold hydrolase -
  CFK78_RS00545 (CFK78_00545) nusG 113443..113991 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  CFK78_RS00550 (CFK78_00550) secE 114089..114268 (-) 180 WP_011375365.1 preprotein translocase subunit SecE -
  CFK78_RS00555 (CFK78_00555) rpmG 114278..114427 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  CFK78_RS00560 (CFK78_00560) sigH 114553..115113 (-) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  CFK78_RS00565 (CFK78_00565) - 115191..115724 (-) 534 WP_016265667.1 NYN domain-containing protein -
  CFK78_RS00570 (CFK78_00570) rlmB 115728..116615 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CFK78_RS00575 (CFK78_00575) - 116602..117009 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  CFK78_RS00580 (CFK78_00580) cysS 117006..118412 (-) 1407 WP_120760956.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=317372 CFK78_RS00560 WP_016265666.1 114553..115113(-) (sigH) [Latilactobacillus sakei strain ZFM220]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=317372 CFK78_RS00560 WP_016265666.1 114553..115113(-) (sigH) [Latilactobacillus sakei strain ZFM220]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978

Multiple sequence alignment