Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CN228_RS10520 Genome accession   NZ_CP032631
Coordinates   2103838..2106054 (+) Length   738 a.a.
NCBI ID   WP_017683999.1    Uniprot ID   A0AAN4QBP5
Organism   Pseudomonas syringae pv. actinidiae str. Shaanxi_M228     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098838..2111054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CN228_RS10510 (CN228_10510) - 2100725..2101576 (-) 852 WP_003381122.1 DUF4123 domain-containing protein -
  CN228_RS10515 (CN228_10515) tssI 2101573..2103600 (-) 2028 WP_017684000.1 type VI secretion system tip protein VgrG -
  CN228_RS10520 (CN228_10520) comA 2103838..2106054 (+) 2217 WP_017683999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CN228_RS10525 (CN228_10525) exbB 2106098..2106814 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CN228_RS10530 (CN228_10530) - 2106811..2107242 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  CN228_RS10535 (CN228_10535) lpxK 2107242..2108237 (+) 996 WP_003381114.1 tetraacyldisaccharide 4'-kinase -
  CN228_RS10540 (CN228_10540) - 2108255..2108440 (+) 186 WP_003381112.1 Trm112 family protein -
  CN228_RS10545 (CN228_10545) kdsB 2108437..2109201 (+) 765 WP_003381111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CN228_RS10550 (CN228_10550) murB 2109236..2110255 (+) 1020 WP_003381110.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80730.03 Da        Isoelectric Point: 10.4816

>NTDB_id=317351 CN228_RS10520 WP_017683999.1 2103838..2106054(+) (comA) [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228]
MRTGMIALALGLVVLRFLPALPPTWLVLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVVGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPFPVVGEGLLWLAGGALEWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGVFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPDGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRARWLQAPHHGSRSSSSKVFLQAVAPVGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=317351 CN228_RS10520 WP_017683999.1 2103838..2106054(+) (comA) [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGTCCTACGCTTTCTGCCCGCTTTACCGCCGACCTGGCTCGT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTTCTGCTCGGCTTCACGT
GGGCGTGTGTTTCGGCGCAGTGGGCATTGAATGACCGTCTGCAGCAACGGCTGGACGGCCAGACGCTGTGGTTGCAAGGC
AAAGTGGTCGGTTTGCCTAGCGTTGCCGAGGGCGTGGTTCGTTTCGAGTTGGAGCACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCGCTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGGTTAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGTTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTAC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTTGCTGGCGTGATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGCGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCATTCATCGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCTATCGGCCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCGTTG
ATCGGGACGTTATTGCTGCCGTTTCCTGTTGTCGGTGAAGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGGAATGGCTATT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTACCCGCCTGGCTGCCCAGCGCGGTGCCCGGCTGGGCGTGGCTGTTGAGTC
TGCTCGGTGTCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGTTGGCCATTATTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCCGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGATGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACGCTGCTCTACGACGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAAAGGGTGGTCGTGC
CCGCGATGCGCAAGTCCGGTGTTCGCCATCTGGACCTGATGCTGATCAGCCATGCCGACGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGAGTGTTGGGCGGGGAGCTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCGACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCTGGCGGCGAGCGTCTGCTGCTGACGGGCGACATCGATGTGCACGCCGAA
CGCGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCGCTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGGTGGGCGTGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CTTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.687

97.019

0.618
  comA Ralstonia pseudosolanacearum GMI1000

32.619

100

0.371

Multiple sequence alignment