Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CN228_RS02975 | Genome accession | NZ_CP032631 |
| Coordinates | 587445..588014 (+) | Length | 189 a.a. |
| NCBI ID | WP_003426596.1 | Uniprot ID | A0A0K8M6E3 |
| Organism | Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 582445..593014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CN228_RS02960 (CN228_02960) | bfr | 582519..582983 (+) | 465 | WP_004397024.1 | bacterioferritin | - |
| CN228_RS02965 (CN228_02965) | uvrA | 583077..585911 (-) | 2835 | WP_005614297.1 | excinuclease ABC subunit UvrA | - |
| CN228_RS02970 (CN228_02970) | - | 586041..587435 (+) | 1395 | WP_004397022.1 | MFS transporter | - |
| CN228_RS02975 (CN228_02975) | ssb | 587445..588014 (+) | 570 | WP_003426596.1 | single-stranded DNA-binding protein | Machinery gene |
| CN228_RS02980 (CN228_02980) | - | 588238..588537 (-) | 300 | WP_003379193.1 | hypothetical protein | - |
| CN228_RS02985 (CN228_02985) | - | 588660..589403 (-) | 744 | WP_003379192.1 | inositol monophosphatase family protein | - |
| CN228_RS02990 (CN228_02990) | - | 589400..590161 (-) | 762 | WP_003379189.1 | glycerophosphoryl diester phosphodiesterase | - |
| CN228_RS02995 (CN228_02995) | ugpC | 590168..591274 (-) | 1107 | WP_003379187.1 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | - |
| CN228_RS03000 (CN228_03000) | - | 591271..592164 (-) | 894 | WP_003379184.1 | ABC transporter permease subunit | - |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 20974.10 Da Isoelectric Point: 5.9404
>NTDB_id=317344 CN228_RS02975 WP_003426596.1 587445..588014(+) (ssb) [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 570 bp
>NTDB_id=317344 CN228_RS02975 WP_003426596.1 587445..588014(+) (ssb) [Pseudomonas syringae pv. actinidiae str. Shaanxi_M228]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
47.368 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
44.681 |
99.471 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.681 |
99.471 |
0.444 |