Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E7Z57_RS10225 Genome accession   NZ_CP039339
Coordinates   2110178..2111011 (-) Length   277 a.a.
NCBI ID   WP_138929027.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UW386     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105178..2116011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z57_RS10210 (E7Z57_10210) - 2106932..2107651 (+) 720 WP_254706870.1 hypothetical protein -
  E7Z57_RS10215 (E7Z57_10215) - 2107691..2107894 (+) 204 WP_011001567.1 DUF465 domain-containing protein -
  E7Z57_RS10220 (E7Z57_10220) - 2107974..2110100 (+) 2127 WP_138929026.1 ATP-dependent DNA helicase -
  E7Z57_RS10225 (E7Z57_10225) comL 2110178..2111011 (-) 834 WP_138929027.1 outer membrane protein assembly factor BamD Machinery gene
  E7Z57_RS10230 (E7Z57_10230) - 2111027..2112139 (+) 1113 WP_138929028.1 RluA family pseudouridine synthase -
  E7Z57_RS10235 (E7Z57_10235) pgeF 2112123..2112926 (+) 804 WP_064049358.1 peptidoglycan editing factor PgeF -
  E7Z57_RS10240 (E7Z57_10240) - 2112966..2113193 (-) 228 WP_064049359.1 hypothetical protein -
  E7Z57_RS10245 (E7Z57_10245) phaC 2113477..2115273 (+) 1797 WP_064049360.1 class I poly(R)-hydroxyalkanoic acid synthase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 31458.54 Da        Isoelectric Point: 8.6499

>NTDB_id=317337 E7Z57_RS10225 WP_138929027.1 2110178..2111011(-) (comL) [Ralstonia pseudosolanacearum strain UW386]
MSVTSMKLARIRARIGAVLAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGP
FAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDA
FKTLITRFPNSKYTPDAAQRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALG
MKDLRDDTERIIKQNYPSSDFLLYGQRKKAKPWYQWW

Nucleotide


Download         Length: 834 bp        

>NTDB_id=317337 E7Z57_RS10225 WP_138929027.1 2110178..2111011(-) (comL) [Ralstonia pseudosolanacearum strain UW386]
ATGTCGGTCACGAGCATGAAGCTGGCGCGCATTCGCGCGCGAATCGGAGCGGTATTGGCGGCGGGCGTTGCATGCCTCGC
GATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCAGGCTGGTCGGCCAACAAATTATATTCGGAAGCGA
AGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGCTCGAGAGCCGCTACCCGTTCGGGCCC
TTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAACTACAAGGACGGCGAAACCGCCGCCGCGCTGGCTGCGGTCGA
TCGCTTCATCCAGCTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCTCAAGGGCCTGATCAACTTCAACGACA
ACCTGGGCTGGCTGGGCCGATTCTCCAACCAGGACCTGAGCGAACGCGATCCGAAGGCGGCCCGCGCCGCTTACGATGCG
TTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACACGCCGGACGCCGCGCAGCGCATGCAGTACATCGTCAACGC
GATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGCGCCTACCTGGCCGCCACCAACCGCGCGCAGG
AAGCCATCAAGGACTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCATGATGAAGTCCTACGAAGCGCTGGGC
ATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTATCCGAGCAGCGATTTCCTGCTGTACGGACAGCG
CAAGAAGGCCAAGCCGTGGTATCAGTGGTGGTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(46-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

46.97

95.307

0.448
  comL Neisseria gonorrhoeae MS11

45.455

95.307

0.433