Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   D7I46_RS09070 Genome accession   NZ_CP032627
Coordinates   1949785..1950279 (-) Length   164 a.a.
NCBI ID   WP_120772608.1    Uniprot ID   A0A387BG34
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944785..1955279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS09070 (D7I46_09070) comX 1949785..1950279 (-) 495 WP_120772608.1 sigma-70 family RNA polymerase sigma factor Regulator
  D7I46_RS09075 (D7I46_09075) ezrA 1950506..1952236 (-) 1731 WP_120772609.1 septation ring formation regulator EzrA -
  D7I46_RS09080 (D7I46_09080) tsf 1952424..1953452 (-) 1029 WP_120772610.1 translation elongation factor Ts -
  D7I46_RS09085 (D7I46_09085) rpsB 1953574..1954341 (-) 768 WP_120772611.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19467.35 Da        Isoelectric Point: 6.3434

>NTDB_id=317321 D7I46_RS09070 WP_120772608.1 1949785..1950279(-) (comX) [Lactococcus allomyrinae strain 1JSPR-7]
MPQNNKINFDQVFSRLKPIVLKAMKQLRVRSWTYDDYLQEGMIVLYQLLESSVGLEGLPIKFKVQYHQRLIDEIRHSQAK
KRGFDQLGAVDIYEYSDVISSHGETPESALVFNHLLAEVYECLRPHYQELLVRQMRGEELTRMERYRLKEKIKSILFDLD
DSEE

Nucleotide


Download         Length: 495 bp        

>NTDB_id=317321 D7I46_RS09070 WP_120772608.1 1949785..1950279(-) (comX) [Lactococcus allomyrinae strain 1JSPR-7]
TTGCCACAAAACAATAAAATAAATTTTGATCAAGTCTTTTCAAGACTTAAACCAATTGTCTTAAAAGCGATGAAACAGCT
TCGAGTTCGCTCTTGGACATATGACGATTATCTTCAAGAAGGAATGATAGTTCTGTATCAATTACTTGAATCAAGTGTGG
GGTTGGAGGGACTGCCAATAAAATTCAAGGTCCAATATCACCAACGGTTGATAGATGAAATCCGTCATAGTCAAGCGAAA
AAACGAGGCTTTGACCAATTAGGAGCGGTAGATATCTATGAGTATTCGGATGTCATTTCGTCACACGGAGAGACCCCGGA
AAGTGCACTTGTATTTAATCACCTTCTAGCAGAGGTGTATGAGTGCCTTCGTCCTCATTACCAAGAACTTCTCGTTCGCC
AAATGCGAGGCGAAGAACTGACACGTATGGAGCGCTATCGGCTCAAAGAAAAAATTAAATCTATTCTTTTTGATTTAGAT
GACTCGGAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BG34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

64.706

93.293

0.604
  comX Lactococcus lactis subsp. lactis strain DGCC12653

60.39

93.902

0.567

Multiple sequence alignment