Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D7I46_RS06420 Genome accession   NZ_CP032627
Coordinates   1375681..1377474 (-) Length   597 a.a.
NCBI ID   WP_120772146.1    Uniprot ID   A0A387BE02
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1370681..1382474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS06405 (D7I46_06405) - 1372928..1373854 (-) 927 WP_120772143.1 peptidyl-prolyl cis-trans isomerase -
  D7I46_RS06410 (D7I46_06410) - 1373998..1374693 (-) 696 WP_120772144.1 O-methyltransferase -
  D7I46_RS06415 (D7I46_06415) - 1374714..1375547 (-) 834 WP_120772145.1 aminoglycoside 6-adenylyltransferase -
  D7I46_RS06420 (D7I46_06420) pepF 1375681..1377474 (-) 1794 WP_120772146.1 oligoendopeptidase F Regulator
  D7I46_RS06425 (D7I46_06425) - 1377669..1378535 (-) 867 WP_120772147.1 HAD-IIB family hydrolase -
  D7I46_RS06430 (D7I46_06430) coiA 1378661..1379653 (-) 993 WP_120772148.1 competence protein CoiA Machinery gene
  D7I46_RS06435 (D7I46_06435) - 1379767..1380846 (-) 1080 WP_420844004.1 YdcF family protein -
  D7I46_RS06440 (D7I46_06440) - 1381046..1382467 (-) 1422 WP_120772150.1 NCS2 family permease -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 69446.88 Da        Isoelectric Point: 4.6768

>NTDB_id=317301 D7I46_RS06420 WP_120772146.1 1375681..1377474(-) (pepF) [Lactococcus allomyrinae strain 1JSPR-7]
MVKERTEILEQLTWDLTTIFSTDEAWEEELDCVTGNIEDAEADFVGHLLDNAATLNEITATMLSISRDVEKLYVYASMKN
DQDTRAAKYQEYQAKATTLYAKFGEAFSFYEPEFLALTTENYQKLLLDEPQLKKYQHYFERLFTKKAHILTQKEEKLLAS
AGEIFGSGAEIFEVFDNADVRFPQVKDESGKEIQLTHGNYISLMESKDRTARKNAYKALYSNYEQYQHTYAKTLQTNVKV
HNFNAEVRGYSSAREAALAENFVPEKVYDVLIETVNKYLPLLHRYIVLRKEILNLSDLKMYDIYTPLSTLDYKFNYEDGV
KKAQEVLAIFGEDYTKRVKRAFDERWIDVCENVGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLNETEDDKERFALLNHWLDSFRGTIYRQAQFAEFEQMIHEADAKGQVLTSE
FMNDTYGKLNEKYYGLKAEENLEIQYEWARIPHFYYNFYVFQYSTGFAAATYLAEKIVHGTTENREKYLNYLKAGSSAYP
LDVIAKAGVDMTSAEYLESSFQLFEKRLKEFETLVKK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=317301 D7I46_RS06420 WP_120772146.1 1375681..1377474(-) (pepF) [Lactococcus allomyrinae strain 1JSPR-7]
ATGGTTAAAGAAAGAACTGAAATTCTAGAACAATTGACTTGGGATTTAACAACGATTTTTTCAACAGATGAGGCTTGGGA
AGAAGAGTTAGATTGTGTTACAGGCAATATTGAGGATGCAGAAGCAGATTTTGTAGGGCATTTATTAGATAACGCAGCAA
CTTTGAATGAGATAACAGCGACCATGCTCTCAATCTCAAGAGATGTGGAAAAGCTCTACGTCTACGCTTCTATGAAAAAT
GACCAAGACACTAGAGCTGCAAAGTACCAAGAATATCAAGCAAAAGCTACAACACTTTACGCAAAATTTGGTGAAGCATT
TTCCTTCTATGAACCAGAATTTCTAGCGTTAACAACTGAAAATTATCAAAAATTATTATTAGACGAGCCACAATTAAAAA
AATATCAACATTATTTTGAACGATTGTTTACCAAAAAAGCTCATATTCTGACCCAAAAAGAGGAAAAACTTCTCGCATCC
GCAGGAGAAATTTTTGGTAGTGGTGCAGAAATATTTGAAGTATTTGATAATGCAGATGTCCGCTTTCCACAAGTAAAAGA
TGAGTCAGGTAAAGAAATTCAACTGACTCATGGGAATTATATTTCGCTTATGGAAAGTAAGGATAGAACTGCTCGTAAAA
ATGCTTATAAAGCGCTTTATAGTAACTATGAACAATATCAACATACTTATGCTAAAACCTTACAAACTAATGTGAAAGTT
CATAATTTCAATGCAGAAGTACGAGGCTATTCATCAGCACGGGAAGCAGCTTTAGCAGAAAATTTTGTACCAGAAAAAGT
TTACGATGTTCTTATTGAAACAGTCAATAAATATTTACCTTTATTACACCGTTATATTGTACTTCGCAAAGAAATCTTGA
ATCTTTCAGATTTAAAAATGTATGATATCTATACACCATTATCAACATTAGACTATAAATTTAACTATGAAGATGGGGTA
AAAAAGGCACAAGAAGTACTAGCAATTTTTGGAGAAGATTATACCAAACGTGTAAAAAGAGCTTTTGATGAACGTTGGAT
TGATGTATGTGAAAATGTAGGAAAACGCTCAGGCGCTTATTCAGGTGGGTCTTATGATACAAATGCTTTCATGTTACTTA
ACTGGCAAGAAACATTGGATGACCTGTTTACACTGGTGCATGAGATGGGACATTCCATGCACAGTACATTTACACGTGAA
AACCAGCCCTATGTTTACGGTGATTATCCGATTTTTTTAGCTGAGATTGCTTCAACCACAAATGAAAATATTTTGACTGA
AACATTACTCAATGAAACAGAAGATGATAAAGAACGGTTTGCCTTACTTAATCATTGGCTGGATAGTTTCCGAGGAACAA
TTTATCGTCAAGCGCAATTTGCCGAGTTTGAGCAGATGATTCACGAAGCAGATGCTAAAGGTCAAGTTCTCACGAGTGAG
TTTATGAATGATACTTATGGAAAATTAAACGAAAAATATTATGGCTTAAAAGCAGAAGAAAATTTAGAGATTCAGTATGA
ATGGGCAAGAATTCCACATTTTTACTATAATTTCTATGTTTTCCAATATTCTACAGGGTTTGCAGCTGCGACCTATCTTG
CAGAAAAAATTGTTCACGGAACGACAGAAAATCGTGAAAAATATTTGAATTATCTTAAAGCAGGTTCATCCGCTTATCCA
TTAGATGTTATTGCTAAAGCAGGCGTTGACATGACATCCGCAGAGTATCTTGAAAGTTCATTCCAGCTTTTTGAAAAGCG
CCTAAAAGAATTTGAAACCCTTGTAAAAAAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BE02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.489

100

0.645

Multiple sequence alignment