Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D7D53_RS08940 Genome accession   NZ_CP032621
Coordinates   1768733..1770094 (-) Length   453 a.a.
NCBI ID   WP_077804517.1    Uniprot ID   A0A2N6PNQ5
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763733..1775094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS08910 (D7D53_08910) - 1764453..1765463 (+) 1011 WP_120770744.1 YeiH family protein -
  D7D53_RS08920 (D7D53_08920) - 1765656..1766093 (-) 438 WP_120770745.1 CoA-binding protein -
  D7D53_RS08925 (D7D53_08925) - 1766209..1767177 (-) 969 WP_078238233.1 ribose-phosphate diphosphokinase -
  D7D53_RS08930 (D7D53_08930) - 1767323..1768138 (-) 816 WP_120770746.1 PrsW family intramembrane metalloprotease -
  D7D53_RS08935 (D7D53_08935) - 1768163..1768660 (-) 498 WP_004237611.1 beta-class carbonic anhydrase -
  D7D53_RS08940 (D7D53_08940) radA 1768733..1770094 (-) 1362 WP_077804517.1 DNA repair protein RadA Machinery gene
  D7D53_RS08945 (D7D53_08945) - 1770108..1770665 (-) 558 WP_162927897.1 histidine phosphatase family protein -
  D7D53_RS08950 (D7D53_08950) - 1770625..1771068 (-) 444 WP_061864865.1 dUTP diphosphatase -
  D7D53_RS08960 (D7D53_08960) tadA 1771255..1771722 (-) 468 WP_120770748.1 tRNA adenosine(34) deaminase TadA -
  D7D53_RS08965 (D7D53_08965) - 1771922..1773208 (-) 1287 WP_001832534.1 adenylosuccinate synthase -
  D7D53_RS08970 (D7D53_08970) comW 1773439..1773675 (-) 237 WP_120770749.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49416.91 Da        Isoelectric Point: 6.5137

>NTDB_id=317223 D7D53_RS08940 WP_077804517.1 1768733..1770094(-) (radA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=317223 D7D53_RS08940 WP_077804517.1 1768733..1770094(-) (radA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGATGCCCTAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTTAAGAATGCGCGTGTGTCTTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCTATCAATGTCAATCGAACCAAGACAGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGAGTGGTACCGGGAAGTCTTGTTCTTATCGGTGGGGATCCTGGAATTGGGAAATCAACCCTTCTCCTACA
AGTTTCAACCCAGCTATCTCAAGTGGGGACGGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGTTTGGGTGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGAGCTGAGGTGGAG
CGCATCCAACCAGACTTCCTCATTATTGACTCCATTCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGATCTGT
TTCTCAAGTGCGTGAGGTGACGGCTGAGCTCATGCAACTGGCCAAGACCAATAATATTGCTATCTTTATCGTAGGGCATG
TAACCAAGGAAGGAACCTTGGCTGGTCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGC
CACCATACCTTCCGTATTTTAAGAGCGGTCAAAAACCGTTTTGGCTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGTGGATTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCTTAGAAGAGCGTTTGGATGGAGCAACTGGTTCATCAATCG
TTGTGACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTGACACCGACCATGTTTGGAAATGCCAAG
CGTACGACGACGGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAGCGGGCAGGTCTTCTCTTGCA
AAATCAGGACGCCTATCTCAAATCTGCTGGCGGTGTCAAATTGGATGAACCTGCCATTGACTTGGCCGTTGCAGTTGCCA
TTGCTTCGAGCTACAAGGACAAGCCAACTAATCCTCAGGAATGTTTTGTGGGAGAACTGGGCTTGACAGGAGAAATTCGG
CGCGTGAATCGTATTGAGCAGCGCATTAATGAAGCTGCTAAACTGGGTTTTACTAAAATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCCGCCTAAGGAAATTCAGGTTATTGGAGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6PNQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.779

100

0.998
  radA Streptococcus mitis SK321

99.779

100

0.998
  radA Streptococcus pneumoniae Rx1

99.779

100

0.998
  radA Streptococcus pneumoniae D39

99.779

100

0.998
  radA Streptococcus pneumoniae R6

99.779

100

0.998
  radA Streptococcus pneumoniae TIGR4

99.779

100

0.998
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment