Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   D7D53_RS05965 Genome accession   NZ_CP032621
Coordinates   1230702..1231934 (-) Length   410 a.a.
NCBI ID   WP_012972566.1    Uniprot ID   A0A387B487
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225702..1236934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS05935 (D7D53_05935) - 1225889..1226857 (+) 969 WP_120770430.1 NAD(P)/FAD-dependent oxidoreductase -
  D7D53_RS05940 (D7D53_05940) whiA 1226891..1227802 (-) 912 WP_120770431.1 DNA-binding protein WhiA -
  D7D53_RS05945 (D7D53_05945) - 1227799..1228776 (-) 978 WP_120770432.1 YvcK family protein -
  D7D53_RS05950 (D7D53_05950) rapZ 1228773..1229663 (-) 891 WP_120770433.1 RNase adapter RapZ -
  D7D53_RS05955 (D7D53_05955) - 1229715..1230095 (-) 381 WP_001140420.1 RidA family protein -
  D7D53_RS05960 (D7D53_05960) yihA 1230106..1230693 (-) 588 WP_000422605.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  D7D53_RS05965 (D7D53_05965) clpX 1230702..1231934 (-) 1233 WP_012972566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  D7D53_RS05970 (D7D53_05970) - 1231971..1232141 (-) 171 WP_045612102.1 hypothetical protein -
  D7D53_RS05975 (D7D53_05975) - 1232141..1232647 (-) 507 WP_120770434.1 dihydrofolate reductase -
  D7D53_RS05980 (D7D53_05980) cmk 1232767..1233441 (-) 675 WP_004262329.1 (d)CMP kinase -
  D7D53_RS05985 (D7D53_05985) - 1233450..1233941 (-) 492 WP_042750773.1 SAG1386/EF1546 family surface-associated protein -
  D7D53_RS05990 (D7D53_05990) - 1233987..1234184 (+) 198 WP_162927880.1 ferredoxin -
  D7D53_RS05995 (D7D53_05995) - 1234242..1235207 (-) 966 WP_120770863.1 glycosyltransferase family 2 protein -
  D7D53_RS06000 (D7D53_06000) galE 1235209..1236228 (-) 1020 WP_120770436.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45681.16 Da        Isoelectric Point: 4.4240

>NTDB_id=317195 D7D53_RS05965 WP_012972566.1 1230702..1231934(-) (clpX) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MPTNRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=317195 D7D53_RS05965 WP_012972566.1 1230702..1231934(-) (clpX) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGCCTACAAATAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTAGCCCAGGAAATCATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTACCAAAACCAATCGAACTCCTCCATATCTTGAACCATTATGTAATCGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGTATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTAATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCGATCGCAGATGCCACAGCTCTTACGGAGGCTGGTTATGTAGGTGAGGATGTGGAAAAT
ATCCTCCTTAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTATCGATTACACGTGACGTTTCTGGTGAAGGGGTACAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGTGTGCCACCTCAAGGTGGACGCAAGCATCCACAACAAGAGATGATTCAAGTTGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATCGTCAAACAACGTCTTGGAGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAAGCGATTGATGAAAACAGCTCATACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGTATTATTCCTGAGCTGATTGGACGCTTACCTGTCTTTGCAGCTCTTGAGCAATTGACTGTTGATGACTTGGTTCGT
ATTTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATATCAAACCTTGTTATCTTATGACGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAAATCGCCAATAAGGCTATCGAACGCAAAACCGGTGCGCGTGGTCTTCGTTCCATCATTGAAG
AAACCATGCTAGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCTTGGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387B487

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment