Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D7D50_RS09510 Genome accession   NZ_CP032620
Coordinates   1903504..1905306 (-) Length   600 a.a.
NCBI ID   WP_120702166.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898504..1910306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS09490 (D7D50_09490) - 1898594..1901386 (-) 2793 WP_120702161.1 class I SAM-dependent DNA methyltransferase -
  D7D50_RS09495 (D7D50_09495) - 1901647..1901760 (-) 114 Protein_1744 spermidine/putrescine ABC transporter substrate-binding protein -
  D7D50_RS09500 (D7D50_09500) prsA 1901770..1902711 (-) 942 WP_120702163.1 peptidylprolyl isomerase PrsA -
  D7D50_RS09505 (D7D50_09505) - 1902789..1903502 (-) 714 WP_120702165.1 O-methyltransferase -
  D7D50_RS09510 (D7D50_09510) pepF 1903504..1905306 (-) 1803 WP_120702166.1 oligoendopeptidase F Regulator
  D7D50_RS09515 (D7D50_09515) - 1905375..1905584 (-) 210 WP_023022716.1 hypothetical protein -
  D7D50_RS09520 (D7D50_09520) coiA 1905753..1906703 (-) 951 WP_023022714.1 competence protein CoiA Machinery gene
  D7D50_RS09525 (D7D50_09525) - 1907128..1907682 (-) 555 WP_023022712.1 hypothetical protein -
  D7D50_RS09530 (D7D50_09530) - 1907843..1908394 (-) 552 WP_023022710.1 hypothetical protein -
  D7D50_RS09535 (D7D50_09535) - 1908751..1910040 (-) 1290 WP_023022708.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69182.23 Da        Isoelectric Point: 4.5702

>NTDB_id=317156 D7D50_RS09510 WP_120702166.1 1903504..1905306(-) (pepF) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEATALAAAIKDAAHFAGSLLSSPANLLETTEVYLDLSRRLEKVYVYAHMKND
QDTRVAKYQEFQSKAMSLYSLLGETFAFYEPEFMEITEEQYTNFLKEVPALEAYAHYFDKLLKTKEHVLSQKEEELLAGA
GEIFAAAGETFEILDNADIVFPMVKDDQGQEVQLTHGNYISLVESKDRQVRKEAYQALYGVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYDSLVEAVNKHLPLLQRYVKLRSKILGIEDLKMYDVYTPLSSTDYKFTYEEAIA
KSEQALAVLGDDYLSRVKRAFTERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEQLLAEVEDDETRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDKDKYLEYLKAGNSDYPL
NVIRKAGVDMEKEDYLNAAFEVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=317156 D7D50_RS09510 WP_120702166.1 1903504..1905306(-) (pepF) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGGTAAAACAACGAAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACCATTTTTGCGACAGACCAAGCATGGGA
AGAAGAAGCAACTGCCTTAGCTGCAGCTATTAAAGATGCTGCCCATTTTGCAGGCTCTTTATTGTCTTCTCCAGCCAACC
TATTAGAAACCACAGAAGTTTATTTGGACTTGAGCCGTCGTTTGGAGAAGGTTTATGTCTACGCTCATATGAAGAATGAC
CAGGACACACGCGTAGCCAAATACCAAGAATTCCAATCAAAAGCCATGTCCCTATACAGCCTTTTAGGGGAGACCTTTGC
CTTCTACGAACCAGAATTTATGGAGATCACCGAAGAGCAATATACCAACTTCTTGAAAGAAGTCCCTGCCCTAGAAGCTT
ATGCTCATTACTTTGATAAATTACTCAAAACCAAAGAGCATGTCCTTTCTCAAAAAGAAGAAGAATTATTAGCAGGAGCG
GGTGAAATCTTCGCTGCAGCGGGTGAAACTTTTGAGATCTTGGACAATGCAGATATCGTCTTCCCGATGGTGAAGGATGA
CCAAGGCCAAGAAGTGCAGTTGACCCATGGGAACTATATTTCTTTAGTAGAGTCTAAGGATCGCCAAGTACGTAAGGAAG
CTTACCAAGCCTTGTATGGTGTCTACGAACAGTACCAACATACTTATGCGAAGACCCTTCAGACCAACGTCAAGGTTCAC
AATTACAATGCCAAGGTTCGCAAATTCTCAAGCGCGCGTGAGGCAGCTCTTTCTGCTAACTTTATCCCAGAAAGCGTCTA
TGATAGCTTGGTAGAAGCGGTGAACAAGCACTTGCCTTTGTTGCAACGCTACGTGAAACTCCGCTCAAAAATCTTGGGAA
TTGAAGATTTGAAGATGTATGATGTCTACACGCCACTGTCTTCTACTGATTACAAGTTCACCTATGAAGAAGCTATTGCT
AAGTCTGAGCAAGCTTTGGCGGTGCTTGGAGATGACTACCTATCACGCGTGAAGCGCGCCTTTACTGAACGTTGGATCGA
CGTCCATGTCAACCAAGGAAAACGTTCAGGTGCCTATTCAGGTGGATCGTACGACACCAATGCCTTTATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTAGTGCATGAGACTGGCCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAACCTTATGTCTATGGGGATTATTCTATCTTCCTTGCTGAGATTGCTTCCACAACAAATGAAAATATCTTGACCGAGCA
ATTATTGGCAGAAGTAGAAGATGATGAAACCCGTTTTGCCATTCTCAACCATTTCTTGGATGGCTTCCGTGGTACAGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAACATGCGATTCACAAGGCCGACCAAGAAGGACAAGTCTTGACCAGCGAATTC
TTGAATGAGCTGTATGCAGACTTGAACGAGAAATATTATGGTCTTTCAAAAGAAGATAACCCAGAAATCCAATACGAATG
GGCTCGCATTCCTCATTTCTACTATAACTACTATGTTTTCCAATATTCAACTGGTTTTGCAGCAGCCTCTGCCTTGGCTG
AGAAAATTGTGCATGGAACACAGGAAGATAAGGACAAATACCTAGAGTATTTAAAGGCCGGAAATTCGGATTATCCACTC
AACGTGATCCGCAAGGCGGGTGTCGATATGGAAAAAGAAGACTATCTCAATGCAGCCTTTGAAGTCTTTGAACGTCGTCT
CAATGAATTTGAGGCTCTGGTTGAAAAATTAGGATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.128

99.333

0.687

Multiple sequence alignment