Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   D7D50_RS03130 Genome accession   NZ_CP032620
Coordinates   568612..569373 (-) Length   253 a.a.
NCBI ID   WP_120701436.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 563612..574373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS03105 (D7D50_03105) - 564759..565253 (+) 495 WP_120701435.1 DUF1307 domain-containing protein -
  D7D50_RS03115 (D7D50_03115) - 565441..565632 (-) 192 WP_006596995.1 DUF951 domain-containing protein -
  D7D50_RS03120 (D7D50_03120) dnaN 565696..566832 (-) 1137 WP_006595327.1 DNA polymerase III subunit beta -
  D7D50_RS03125 (D7D50_03125) dnaA 566993..568363 (-) 1371 WP_023024816.1 chromosomal replication initiator protein DnaA -
  D7D50_RS03130 (D7D50_03130) spo0J 568612..569373 (-) 762 WP_120701436.1 ParB/RepB/Spo0J family partition protein Regulator
  D7D50_RS03135 (D7D50_03135) htrA 569439..570617 (-) 1179 WP_120701437.1 S1C family serine protease Regulator
  D7D50_RS03140 (D7D50_03140) rlmH 570820..571299 (+) 480 WP_120701438.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  D7D50_RS03150 (D7D50_03150) - 571658..571801 (+) 144 WP_117744856.1 bacteriocin -
  D7D50_RS10215 - 571801..573120 (+) 1320 WP_227877756.1 sensor histidine kinase -
  D7D50_RS03160 (D7D50_03160) comE/comE2 573121..573873 (+) 753 WP_023024804.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29252.99 Da        Isoelectric Point: 9.7291

>NTDB_id=317130 D7D50_RS03130 WP_120701436.1 568612..569373(-) (spo0J) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MEKIDIIDVKQIRTNPFQPRQTFVKEKLEELAASIKENGLIQPIIVRKSPIVGYELLAGERRYRAAQMAGFKEIPAIIRE
LSDDDMIKQAIIENLQREDLNPIEEAESYQHLINKGATHEEIAQFMGKSRPYISNMVRLLHLSPAVKDAIKNEKISQGHA
RILVPLKENLQIYWLERILKEGLSVRSLEEKVGQKKKTPSKKEKELFLAKEENRLKKILGTEVEIHLTKQEKGSIHISFN
NLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=317130 D7D50_RS03130 WP_120701436.1 568612..569373(-) (spo0J) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGGAAAAAATTGATATTATTGACGTAAAGCAAATACGAACCAATCCTTTTCAACCTCGTCAAACCTTTGTAAAAGAGAA
ATTAGAAGAACTCGCAGCCTCAATCAAAGAAAATGGATTAATCCAACCTATTATTGTTCGAAAATCTCCTATTGTTGGTT
ATGAACTACTTGCTGGAGAAAGACGCTACCGAGCAGCTCAAATGGCTGGTTTCAAAGAAATCCCTGCGATTATAAGAGAA
TTATCAGATGATGACATGATCAAACAAGCCATTATCGAAAATTTACAAAGAGAAGATTTGAATCCAATTGAAGAGGCCGA
ATCCTACCAACATCTTATTAATAAAGGGGCTACCCATGAAGAAATTGCTCAATTTATGGGAAAATCTCGTCCTTACATCA
GCAACATGGTCCGTTTACTTCATCTCTCACCAGCTGTCAAAGACGCTATCAAAAACGAAAAAATTTCACAAGGACATGCC
CGTATTTTAGTTCCCTTAAAGGAAAATCTACAAATCTATTGGCTGGAACGAATTCTGAAAGAAGGACTAAGCGTTCGTAG
TTTGGAAGAAAAGGTTGGTCAAAAAAAGAAAACACCAAGTAAAAAAGAGAAAGAACTCTTTTTAGCAAAGGAAGAAAATA
GACTAAAAAAGATTCTAGGAACCGAAGTAGAAATCCATCTGACGAAACAAGAAAAAGGAAGTATTCATATTTCATTTAAC
AACCTTGATGAATACCAACGAATTATTAACAGTCTCAAATGA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.779

100

0.518

Multiple sequence alignment