Detailed information NTG0317078

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D7Z95_RS04315
• Genome accession: NZ_CP032619
• Coordinates: 940082..940927 (-)
• Length: 281 a.a.
• NCBI ID: WP_205947788.1
• Uniprot ID: -
• Organism: Pectobacterium carotovorum strain HG-49
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 935082..945927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7Z95_RS04290	-	935137..935907 (-)	771	WP_205947790.1	ABC transporter ATP-binding protein	-
D7Z95_RS04295	-	935909..936946 (-)	1038	WP_181838176.1	FecCD family ABC transporter permease	-
D7Z95_RS04300	-	936943..938007 (-)	1065	WP_205947789.1	ABC transporter substrate-binding protein	-
D7Z95_RS04305	-	938483..939508 (+)	1026	WP_015841037.1	LLM class flavin-dependent oxidoreductase	-
D7Z95_RS04310	ypdK	939865..939939 (+)	75	WP_099606229.1	membrane protein YpdK	-
D7Z95_RS04315	pilD	940082..940927 (-)	846	WP_205947788.1	prepilin peptidase	Machinery gene
D7Z95_RS04320	-	941035..941781 (-)	747	WP_205947787.1	type II secretion system protein N	-
D7Z95_RS04325	gspM	941771..942265 (-)	495	WP_205947786.1	type II secretion system protein GspM	-
D7Z95_RS04330	gspL	942262..943539 (-)	1278	WP_205947785.1	type II secretion system protein GspL	-
D7Z95_RS04335	gspK	943536..944522 (-)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
D7Z95_RS04340	gspJ	944519..945169 (-)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
D7Z95_RS04345	gspI	945169..945534 (-)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31261.37 Da
• Isoelectric Point: 7.1428

>NTDB_id=317078 D7Z95_RS04315 WP_205947788.1 940082..940927(-) (pilD) [Pectobacterium carotovorum strain HG-49]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=317078 D7Z95_RS04315 WP_205947788.1 940082..940927(-) (pilD) [Pectobacterium carotovorum strain HG-49]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGTTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTAATTACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGTTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.805	91.459	0.456
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	42.336	97.509	0.413
pilD	Acinetobacter nosocomialis M2	42.336	97.509	0.413