Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   D6Z43_RS18495 Genome accession   NZ_CP032616
Coordinates   3925036..3925443 (-) Length   135 a.a.
NCBI ID   WP_003455569.1    Uniprot ID   A0AAD1BY44
Organism   Pseudomonas sp. DY-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3920036..3930443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6Z43_RS18475 (D6Z43_18475) - 3920922..3921782 (-) 861 WP_120655302.1 protein-glutamate O-methyltransferase -
  D6Z43_RS18480 (D6Z43_18480) - 3921845..3923893 (-) 2049 WP_120653544.1 methyl-accepting chemotaxis protein -
  D6Z43_RS18485 (D6Z43_18485) - 3924033..3924569 (-) 537 WP_120653545.1 chemotaxis protein CheW -
  D6Z43_RS18490 (D6Z43_18490) pilH 3924625..3924990 (-) 366 WP_077524194.1 twitching motility response regulator PilH -
  D6Z43_RS18495 (D6Z43_18495) pilG 3925036..3925443 (-) 408 WP_003455569.1 twitching motility response regulator PilG Regulator
  D6Z43_RS18500 (D6Z43_18500) gshB 3925712..3926674 (+) 963 WP_120653546.1 glutathione synthase -
  D6Z43_RS18505 (D6Z43_18505) - 3926731..3927624 (+) 894 WP_120653547.1 energy transducer TonB -
  D6Z43_RS18510 (D6Z43_18510) - 3927738..3928304 (+) 567 WP_120653548.1 YqgE/AlgH family protein -
  D6Z43_RS18515 (D6Z43_18515) ruvX 3928304..3928744 (+) 441 WP_120653549.1 Holliday junction resolvase RuvX -
  D6Z43_RS18520 (D6Z43_18520) pyrR 3928767..3929279 (+) 513 WP_120653550.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  D6Z43_RS18525 (D6Z43_18525) - 3929316..3930323 (+) 1008 WP_120653551.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14828.19 Da        Isoelectric Point: 6.7128

>NTDB_id=317052 D6Z43_RS18495 WP_003455569.1 3925036..3925443(-) (pilG) [Pseudomonas sp. DY-1]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADSHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=317052 D6Z43_RS18495 WP_003455569.1 3925036..3925443(-) (pilG) [Pseudomonas sp. DY-1]
ATGGAACAGCATTCCGAGGGTTTGAAGGTCATGGTGATCGACGATTCGAAAACGATTCGTCGCACAGCCGAGACTCTGCT
CAAGAAAGTGGGGTGCGAGGTCATCACTGCAGTTGATGGTTTCGACGCCTTGGCCAAGATCGCCGATTCCCACCCGAACA
TCATCTTCGTCGACATCATGATGCCGCGCCTGGACGGTTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCTTTCAAA
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGATCAGTA
CCTCACCAAGCCTTTCAGCAAGGAAGAGCTGCTCGGCGCGATCAAGACTCACGTCCCCGATTTCACCCCGGTGGAGCAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment