Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECO26_RS19005 Genome accession   NC_013361
Coordinates   3585084..3585821 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O26:H11 str. 11368     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3580084..3590821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO26_RS18990 (ECO26_3635) clpC 3580538..3583111 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECO26_RS18995 (ECO26_3636) yfiH 3583241..3583972 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  ECO26_RS19000 (ECO26_3637) rluD 3583969..3584949 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECO26_RS19005 (ECO26_3638) comL 3585084..3585821 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECO26_RS19015 (ECO26_3639) raiA 3586092..3586442 (+) 351 WP_000178457.1 ribosome-associated translation inhibitor RaiA -
  ECO26_RS34185 (ECO26_3640) pheL 3586546..3586593 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECO26_RS19020 (ECO26_3641) pheA 3586692..3587852 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECO26_RS19025 (ECO26_3642) tyrA 3587895..3589016 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECO26_RS19030 (ECO26_3643) aroF 3589027..3590097 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECO26_RS19035 (ECO26_3644) yfiL 3590307..3590672 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=31693 ECO26_RS19005 WP_000197686.1 3585084..3585821(+) (comL) [Escherichia coli O26:H11 str. 11368]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=31693 ECO26_RS19005 WP_000197686.1 3585084..3585821(+) (comL) [Escherichia coli O26:H11 str. 11368]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment