Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO26_RS15215 Genome accession   NC_013361
Coordinates   2828846..2829322 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli O26:H11 str. 11368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2823846..2834322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO26_RS35350 - 2824143..2824256 (+) 114 Protein_2941 hypothetical protein -
  ECO26_RS15180 (ECO26_2903) - 2824295..2825833 (-) 1539 WP_000099148.1 IS66-like element ISEc22 family transposase -
  ECO26_RS15185 (ECO26_2904) tnpB 2825882..2826229 (-) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  ECO26_RS15190 (ECO26_2905) - 2826226..2826630 (-) 405 WP_000839179.1 transposase -
  ECO26_RS15195 - 2826710..2827060 (+) 351 Protein_2945 IrmA family protein -
  ECO26_RS15200 (ECO26_2907) - 2827139..2827372 (+) 234 WP_001119729.1 DUF905 family protein -
  ECO26_RS15205 (ECO26_2908) - 2827472..2828290 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  ECO26_RS15210 (ECO26_2909) - 2828345..2828830 (+) 486 WP_000849582.1 antirestriction protein -
  ECO26_RS15215 (ECO26_2910) radC 2828846..2829322 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  ECO26_RS15220 (ECO26_2911) yeeT 2829391..2829612 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECO26_RS15230 (ECO26_2912) - 2829775..2830143 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECO26_RS15235 (ECO26_2913) - 2830233..2830610 (+) 378 WP_000854757.1 TA system toxin CbtA family protein -
  ECO26_RS15240 (ECO26_2914) - 2830607..2830756 (+) 150 Protein_2953 DUF5983 family protein -
  ECO26_RS34720 - 2830856..2830936 (+) 81 Protein_2954 hypothetical protein -
  ECO26_RS35030 (ECO26_2915) - 2831752..2832123 (+) 372 WP_001295631.1 IS110 family transposase -
  ECO26_RS35355 (ECO26_2916) - 2832394..2832759 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  ECO26_RS15265 (ECO26_2917) tmaR 2832860..2833189 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=31683 ECO26_RS15215 WP_001186725.1 2828846..2829322(+) (radC) [Escherichia coli O26:H11 str. 11368]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31683 ECO26_RS15215 WP_001186725.1 2828846..2829322(+) (radC) [Escherichia coli O26:H11 str. 11368]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment