Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   E5Q09_RS07840 Genome accession   NZ_CP038991
Coordinates   1577771..1578424 (+) Length   217 a.a.
NCBI ID   WP_034350151.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572771..1583424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q09_RS07825 bshA 1573789..1574973 (+) 1185 WP_051618804.1 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA -
  E5Q09_RS07830 - 1575013..1576722 (+) 1710 WP_010888195.1 sensor histidine kinase -
  E5Q09_RS07835 - 1576719..1577750 (+) 1032 WP_010888196.1 DUF4097 family beta strand repeat-containing protein -
  E5Q09_RS07840 vraR 1577771..1578424 (+) 654 WP_034350151.1 response regulator Regulator
  E5Q09_RS07845 - 1578421..1579149 (+) 729 WP_027479858.1 hypothetical protein -
  E5Q09_RS07850 - 1579183..1580103 (-) 921 WP_027479859.1 diacylglycerol/lipid kinase family protein -
  E5Q09_RS07855 wecB 1580312..1581457 (-) 1146 WP_034350154.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  E5Q09_RS07860 - 1581475..1582605 (-) 1131 WP_010888201.1 MraY family glycosyltransferase -
  E5Q09_RS07865 upp 1582701..1583324 (-) 624 WP_027479860.1 uracil phosphoribosyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23608.02 Da        Isoelectric Point: 4.9055

>NTDB_id=316664 E5Q09_RS07840 WP_034350151.1 1577771..1578424(+) (vraR) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6]
MTTPTVRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMDGITATRELRRRLPDT
EVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARGEVRLHPEAARRLVRDFRSPEMRESLTPKETAVLQL
LARGQSNKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGIASLEGVEL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=316664 E5Q09_RS07840 WP_034350151.1 1577771..1578424(+) (vraR) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6]
ATGACCACCCCCACTGTCCGTGTGCTGCTCGTTGACGACCACGCCGTCGTGCGCCAGGGTCTGCGCCTCTTTCTGGGGCT
GGACGAAGGCATCGAAGTGGTGGGCGAGGCCGCCAACGGCGAAGAAGCCCTGCAAGAGGCCGAGCGCCTGCGCCCCGAAG
TCGTCGTGATGGACCTGATGATGCCGGTGATGGATGGCATTACCGCCACCCGTGAGCTGCGCCGCCGCCTGCCCGACACC
GAAGTCATCGCGCTGACCTCCACCCTGGAAGAAAACAAGGTGAACGGCGCGATTGAGGCCGGGGCCATCTCGTACATGCT
CAAGGACGCCTCCAGCGACACCCTGGCCGACGCCATCCACGCGGCGGCGCGCGGCGAAGTGCGGCTGCATCCCGAAGCGG
CGCGGCGGCTGGTGCGCGATTTCCGGTCGCCGGAGATGCGCGAGAGCCTGACCCCCAAGGAAACCGCCGTGCTGCAACTG
CTGGCGCGCGGGCAGAGCAACAAGGACATCGCCGCCGAACAGGGCGTGAGCGAGGCGACGGTCAAGACCCACGTGTCGCG
GCTGCTGAGCAAGCTGGGGCTGGACAGCCGGACGCAGGCGGCGCTCTACGCCCTCAAATACGGGATTGCCAGTCTGGAGG
GCGTGGAGTTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.718

94.931

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.387