Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   D6I99_RS02900 Genome accession   NZ_CP032522
Coordinates   543844..544494 (-) Length   216 a.a.
NCBI ID   WP_136696175.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 538844..549494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS02865 - 539233..540237 (+) 1005 WP_136696412.1 hypothetical protein -
  D6I99_RS02870 tlyA 540234..540995 (+) 762 WP_002872582.1 TlyA family RNA methyltransferase -
  D6I99_RS02875 ribF 540961..541815 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  D6I99_RS02880 cmoA 541802..542512 (+) 711 WP_079460098.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  D6I99_RS02885 - 542502..542717 (-) 216 WP_052817280.1 EexN family lipoprotein -
  D6I99_RS02890 - 542714..543142 (-) 429 WP_044261251.1 EexN family lipoprotein -
  D6I99_RS02895 - 543201..543833 (-) 633 WP_044261250.1 trimeric intracellular cation channel family protein -
  D6I99_RS02900 CJE0566 543844..544494 (-) 651 WP_136696175.1 DNA/RNA non-specific endonuclease Regulator
  D6I99_RS02905 nth 544491..545117 (-) 627 WP_002861300.1 endonuclease III -
  D6I99_RS02910 peb4 545198..546019 (+) 822 WP_044261247.1 peptidylprolyl isomerase PEB4 -
  D6I99_RS02915 fbaA 546019..547083 (+) 1065 WP_126207320.1 class II fructose-bisphosphate aldolase -
  D6I99_RS02920 - 547178..548620 (+) 1443 WP_057035541.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25411.10 Da        Isoelectric Point: 9.5471

>NTDB_id=316656 D6I99_RS02900 WP_136696175.1 543844..544494(-) (CJE0566) [Campylobacter jejuni strain BC]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEALNLKDKQIKKRPRFED
DANIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=316656 D6I99_RS02900 WP_136696175.1 543844..544494(-) (CJE0566) [Campylobacter jejuni strain BC]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTCGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTACAAACTCAAAG
GTACAAAAGCTGTTGCTTATAAAGTAGAAGCTTTAAATTTAAAAGATAAGCAAATTAAAAAACGTCCACGCTTTGAAGAT
GATGCAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCTAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment