Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   E5Q08_RS05035 Genome accession   NZ_CP038987
Coordinates   1006591..1007268 (+) Length   225 a.a.
NCBI ID   WP_027479661.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001591..1012268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q08_RS05020 - 1002026..1003288 (-) 1263 WP_027479664.1 S1C family serine protease -
  E5Q08_RS05025 hslO 1003380..1004261 (-) 882 WP_027479663.1 Hsp33 family molecular chaperone HslO -
  E5Q08_RS05030 - 1004640..1006496 (+) 1857 WP_051618781.1 ABC transporter substrate-binding protein -
  E5Q08_RS05035 vraR 1006591..1007268 (+) 678 WP_027479661.1 response regulator Regulator
  E5Q08_RS05040 - 1007406..1007888 (-) 483 WP_010887631.1 OmpH family outer membrane protein -
  E5Q08_RS05045 - 1008025..1008507 (-) 483 WP_027479660.1 OmpH family outer membrane protein -
  E5Q08_RS05050 - 1008646..1009275 (+) 630 WP_010887633.1 CBS and ACT domain-containing protein -
  E5Q08_RS05055 - 1009733..1010887 (-) 1155 WP_027479659.1 alanine--glyoxylate aminotransferase family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24061.38 Da        Isoelectric Point: 4.7796

>NTDB_id=316601 E5Q08_RS05035 WP_027479661.1 1006591..1007268(+) (vraR) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
MLHTENEAARPITLLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLTPDVILMDVSMPGMNGIEATKAIK
AEQPSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPSIARKVLERFSVASTPTPPEDDL
SPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWIDPRTL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=316601 E5Q08_RS05035 WP_027479661.1 1006591..1007268(+) (vraR) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
ATGCTGCATACCGAGAACGAAGCCGCCCGGCCCATCACCCTGCTGCTGGTGGACGACCACCCGGTGGTCCGCAAGGGCAC
CCGCGAACTTCTTGAAGGCGAGACCGACCTGCGCGTGGTCGGCGAGGCCGGCAGCGGCGAGGAAGCGCTCGCCCAGGCCC
GCTCGCTGACCCCCGACGTGATTCTGATGGACGTGTCCATGCCCGGCATGAACGGTATCGAGGCGACCAAAGCAATTAAG
GCCGAGCAGCCCAGCGTGGGCGTGCTGGTGCTGACCAGCTACGACGACGACGCTTACGTGTTCGCCCTGCTCGAAGCGGG
CGCGGCGGGCTACCTGCTCAAGAACGCCAGCGAAGACGACCTGCTCGGCGCGGTGCGGGCGGTGGCGGCGGGCGAAAGTG
CCCTGCACCCCTCGATTGCCCGCAAGGTCCTCGAACGCTTCAGCGTGGCTTCGACGCCGACCCCGCCCGAGGACGACCTC
AGCCCCCGCGAACTCGAAGTGCTGCGGGTGGCAGCGAGCGGGCGCACCAACAAGGAAATCGCCCGCGACCTCGACATCAG
CCCACGCACCGTGCAGGTCCACCTCGCCAACATCTTTTCCAAACTTGGCGTCGGCAGCCGCACTGAGGCCGTGCTGCACG
GCATCAAGCGCGGCTGGATTGACCCGCGCACGCTCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(15-125)

Bacterial regulatory proteins, luxR family (GerE)

(160-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.627

92.889

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

36.726

100

0.369