Detailed information NTG0031658

Bioinformatically predicted

Overview

• Name: opaR
• Type: Regulator
• Locus tag: VSAL_RS13735
• Genome accession: NC_011312
• Coordinates: 2833164..2833769 (+)
• Length: 201 a.a.
• NCBI ID: WP_012551079.1
• Uniprot ID: -
• Organism: Aliivibrio salmonicida LFI1238
• Function: regulation of Dns (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	2826738..2836005	2833164..2833769	within	0

Gene organization within MGE regions

Location: 2826738..2836005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSAL_RS13695 (VSAL_I2611)	-	2826738..2828225 (-)	1488	WP_012551073.1	IS66-like element ISVsa2 family transposase	-
VSAL_RS23535	-	2828297..2828437 (-)	141	WP_158306883.1	hypothetical protein	-
VSAL_RS22340	tnpB	2828437..2828637 (-)	201	WP_049940413.1	IS66 family insertion sequence element accessory protein TnpB	-
VSAL_RS13705 (VSAL_I2613)	tnpA	2828634..2828948 (-)	315	WP_012548925.1	IS66 family insertion sequence element accessory protein TnpA	-
VSAL_RS13710 (VSAL_I2614)	-	2829036..2829806 (-)	771	WP_012551074.1	ABC transporter permease	-
VSAL_RS13715 (VSAL_I2615)	-	2829806..2830723 (-)	918	WP_012551075.1	ABC transporter ATP-binding protein	-
VSAL_RS13720 (VSAL_I2616)	can	2830820..2831479 (+)	660	WP_012551076.1	carbonate dehydratase	-
VSAL_RS13725 (VSAL_I2617)	-	2831570..2831821 (-)	252	WP_012551077.1	hypothetical protein	-
VSAL_RS13730 (VSAL_I2618)	hpt	2832308..2832838 (-)	531	WP_012551078.1	hypoxanthine phosphoribosyltransferase	-
VSAL_RS13735 (VSAL_I2619)	opaR	2833164..2833769 (+)	606	WP_012551079.1	TetR/AcrR family transcriptional regulator	Regulator
VSAL_RS13740 (VSAL_I2620)	-	2833787..2835276 (-)	1490	Protein_2666	IS66-like element ISVsa2 family transposase	-
VSAL_RS24275 (VSAL_I2621)	tnpB	2835348..2835694 (-)	347	Protein_2667	IS66 family insertion sequence element accessory protein TnpB	-
VSAL_RS13750 (VSAL_I2622)	tnpA	2835691..2836005 (-)	315	WP_012548925.1	IS66 family insertion sequence element accessory protein TnpA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 23461.62 Da
• Isoelectric Point: 5.3217

>NTDB_id=31658 VSAL_RS13735 WP_012551079.1 2833164..2833769(+) (opaR) [Aliivibrio salmonicida LFI1238]
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNRVEQQFHNFIL
NSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTSTREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPE
NLAKMLHGICYSVFIQANRNSSYEELEQTANCFLNMLCIYK

Nucleotide

• Length: 606 bp

>NTDB_id=31658 VSAL_RS13735 WP_012551079.1 2833164..2833769(+) (opaR) [Aliivibrio salmonicida LFI1238]
ATGGAAACGATCCAAAAAAGACCGAGAACTAGGCTATCTCCAGAGAAACGAAAAGAACAACTACTTGATATTGCGATTGA
GGTTTTTTCTCAACGTGGTATTGGTCGTGGCGGTCATGCAGATATAGCAGAAATTGCTCAAGTATCTGTTGCTACGGTAT
TTAATTACTTCCCAACCCGAGAAGATCTGGTTGATGATGTATTAAATCGAGTTGAACAACAATTTCATAACTTCATTCTC
AATTCAATCTCATTAGACCGAGATGTACGCTCCAATCTTCACTCTTTACTCGTGAACATCATAGATACAGTTCAAATGGA
TAATAAGTGGATTAAAGTGTGGTTTGAATGGAGCACCTCTACTCGCGAAGAAGTATGGCCTCTTTTCTTAAGCACTCAAG
TGAATAACCAAAAAGTTATTCATGATATGTTTGCTGAAGGGATTGAGCGTAACGAAGTATGTAATGATCATACCCCTGAA
AACTTAGCTAAAATGCTTCATGGGATTTGTTACTCTGTATTTATTCAAGCAAACCGTAATAGCTCTTATGAAGAACTAGA
ACAAACGGCAAATTGCTTTTTAAATATGCTGTGTATCTATAAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, tetR family (TetR_N) (21-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
opaR	Vibrio parahaemolyticus RIMD 2210633	61.5	99.502	0.612
hapR	Vibrio cholerae C6706	60.804	99.005	0.602
hapR	Vibrio cholerae strain A1552	60.804	99.005	0.602