Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | E5Q06_RS03020 | Genome accession | NZ_CP038979 |
| Coordinates | 599821..602046 (+) | Length | 741 a.a. |
| NCBI ID | WP_010887233.1 | Uniprot ID | Q9RWS7 |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 594821..607046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q06_RS03000 | purU | 596407..597303 (-) | 897 | WP_010887229.1 | formyltetrahydrofolate deformylase | - |
| E5Q06_RS03005 | - | 597394..598509 (+) | 1116 | WP_027479523.1 | aminopeptidase | - |
| E5Q06_RS03010 | clpS | 598557..598898 (+) | 342 | WP_027479522.1 | ATP-dependent Clp protease adapter ClpS | - |
| E5Q06_RS03015 | - | 598895..599815 (+) | 921 | WP_010887232.1 | restriction endonuclease | - |
| E5Q06_RS03020 | clpC | 599821..602046 (+) | 2226 | WP_010887233.1 | AAA family ATPase | Regulator |
| E5Q06_RS03025 | - | 602185..602583 (-) | 399 | WP_027479521.1 | hypothetical protein | - |
| E5Q06_RS03030 | yidD | 602720..603025 (+) | 306 | WP_010887235.1 | membrane protein insertion efficiency factor YidD | - |
| E5Q06_RS03035 | - | 603032..603865 (-) | 834 | WP_027479520.1 | hypothetical protein | - |
| E5Q06_RS03040 | - | 603862..604266 (-) | 405 | WP_027479519.1 | hypothetical protein | - |
| E5Q06_RS03045 | - | 604324..605031 (+) | 708 | WP_010887238.1 | alpha/beta fold hydrolase | - |
| E5Q06_RS03050 | - | 605094..606428 (-) | 1335 | WP_027479518.1 | glycogen synthase | - |
Sequence
Protein
Download Length: 741 a.a. Molecular weight: 78759.37 Da Isoelectric Point: 5.2430
>NTDB_id=316488 E5Q06_RS03020 WP_010887233.1 599821..602046(+) (clpC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
MLSEHLQAALQRAADLAQAAGHEYITQEHLLLALLGDPEAKDALNALGADLNALREALTEQLAELDILDDPDPDFTLGVH
RVVQGAVLQLHASGKGKEQADGARVLVELLEEDDSPARAALEAQGVTRLDLLNYLSHGVAKAPGHSRERRVAGVDGELTA
EGAPAEENPLEAYAQNLTEAAKNGEFDPVIGRGAELERVVHILARRGKNNPVLVGEPGVGKTALAEGLAQRVADGKAPGF
LRGASVYALDLGALLAGTRYRGDFEGRLKAVLAALDGQNSVLFIDELHTLVGAGATEGGSVDAANLLKPALARGKLRVMG
ATTPAELRLLEKDRALWRRFQTVDVPEPSEADAVQILQGLAPKYAAHHGVTYTPPALEAAVRLSARYLRDRFLPDKAIDV
LDEAGAARSSTGQGGEIDVPDIESTVARMARVPVGAVKAEEVQSLATLEADLNRRVYGQEPAVSAVSSAVKLARAGLRNP
QKPQGSFLFAGPTGVGKTELARALAERLGVELIRFDMSEYQEPHTVARLIGAPPGYVGFDQGGLLTDAVAKNPHAVLLLD
EIEKAHPDVYNIFLQLMDHGTLTDHAGKKVDGRGLILIFTTNAGAADASRPALGFSREGRAGEQAEAVKRTFTPEFRNRL
DAVIYFAPLSRTVMTSVVDKFLRELGEQLTERGVTLTVTPAARARLAELGYDPLLGARPLARVIEDKLGRPLADELLFGR
LKDGGAVKVGVQGGEFSFAVS
MLSEHLQAALQRAADLAQAAGHEYITQEHLLLALLGDPEAKDALNALGADLNALREALTEQLAELDILDDPDPDFTLGVH
RVVQGAVLQLHASGKGKEQADGARVLVELLEEDDSPARAALEAQGVTRLDLLNYLSHGVAKAPGHSRERRVAGVDGELTA
EGAPAEENPLEAYAQNLTEAAKNGEFDPVIGRGAELERVVHILARRGKNNPVLVGEPGVGKTALAEGLAQRVADGKAPGF
LRGASVYALDLGALLAGTRYRGDFEGRLKAVLAALDGQNSVLFIDELHTLVGAGATEGGSVDAANLLKPALARGKLRVMG
ATTPAELRLLEKDRALWRRFQTVDVPEPSEADAVQILQGLAPKYAAHHGVTYTPPALEAAVRLSARYLRDRFLPDKAIDV
LDEAGAARSSTGQGGEIDVPDIESTVARMARVPVGAVKAEEVQSLATLEADLNRRVYGQEPAVSAVSSAVKLARAGLRNP
QKPQGSFLFAGPTGVGKTELARALAERLGVELIRFDMSEYQEPHTVARLIGAPPGYVGFDQGGLLTDAVAKNPHAVLLLD
EIEKAHPDVYNIFLQLMDHGTLTDHAGKKVDGRGLILIFTTNAGAADASRPALGFSREGRAGEQAEAVKRTFTPEFRNRL
DAVIYFAPLSRTVMTSVVDKFLRELGEQLTERGVTLTVTPAARARLAELGYDPLLGARPLARVIEDKLGRPLADELLFGR
LKDGGAVKVGVQGGEFSFAVS
Nucleotide
Download Length: 2226 bp
>NTDB_id=316488 E5Q06_RS03020 WP_010887233.1 599821..602046(+) (clpC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
ATGCTTTCCGAACACCTGCAAGCCGCCCTGCAACGCGCCGCCGACCTCGCCCAGGCGGCGGGGCACGAGTACATCACCCA
GGAGCACCTGCTGCTCGCGCTGCTGGGTGACCCCGAGGCCAAAGACGCCCTGAATGCGCTGGGAGCCGATCTAAACGCCC
TGCGCGAAGCCTTGACTGAGCAACTCGCCGAACTCGACATCCTCGACGACCCCGACCCCGACTTCACCCTGGGCGTGCAC
CGCGTGGTGCAGGGCGCCGTGCTGCAACTGCACGCCAGCGGCAAGGGAAAGGAACAGGCCGACGGCGCGCGCGTCCTCGT
CGAACTGCTGGAGGAGGACGACAGCCCCGCCCGCGCCGCGCTTGAGGCGCAGGGCGTGACCCGGCTCGACCTGCTGAACT
ACCTGTCGCACGGCGTGGCGAAAGCGCCGGGCCACAGCCGCGAACGCCGGGTGGCCGGGGTAGACGGCGAATTGACGGCG
GAGGGCGCCCCCGCCGAGGAAAACCCGCTGGAAGCCTACGCGCAGAACCTCACCGAGGCGGCAAAAAACGGAGAGTTCGA
CCCGGTGATTGGCCGGGGCGCCGAACTCGAACGGGTGGTGCACATTCTGGCGCGGCGCGGCAAGAACAACCCGGTTCTGG
TGGGCGAGCCGGGCGTGGGCAAAACCGCGCTGGCTGAGGGGCTGGCACAGCGGGTGGCCGATGGCAAGGCGCCCGGCTTC
CTGCGGGGGGCGTCGGTGTACGCGCTCGACCTGGGGGCACTGTTGGCCGGCACGCGCTACCGGGGCGACTTCGAGGGGCG
GCTCAAGGCCGTGCTGGCCGCGCTCGACGGGCAGAATTCGGTGCTGTTCATAGACGAGCTGCACACCCTGGTCGGCGCCG
GGGCGACAGAGGGCGGCAGTGTGGACGCCGCGAACCTGCTCAAGCCTGCGCTGGCGCGGGGAAAATTACGGGTCATGGGC
GCCACCACGCCTGCCGAACTGCGCCTGCTGGAAAAGGACCGGGCGCTGTGGCGACGTTTTCAGACGGTGGACGTGCCCGA
GCCCTCCGAGGCCGACGCGGTGCAGATTTTGCAAGGCCTCGCGCCTAAGTACGCAGCCCACCACGGCGTCACCTACACTC
CGCCAGCCCTGGAAGCCGCCGTGCGCCTCTCGGCCCGCTACCTGCGCGACCGCTTCCTGCCCGACAAGGCGATTGACGTG
CTCGACGAGGCGGGGGCGGCCCGCAGTAGCACTGGCCAGGGCGGCGAAATAGACGTGCCCGACATCGAAAGCACGGTGGC
ACGCATGGCCCGCGTGCCGGTAGGCGCGGTGAAGGCCGAGGAAGTGCAGAGCCTCGCCACGCTGGAAGCCGACCTCAACC
GCCGGGTTTACGGACAGGAACCCGCGGTAAGCGCAGTGTCCTCGGCGGTCAAGCTCGCCCGCGCGGGCCTGCGCAACCCG
CAAAAGCCGCAGGGGTCGTTCCTGTTTGCCGGGCCGACTGGGGTGGGCAAAACTGAACTCGCCCGCGCGCTGGCCGAGCG
GCTGGGCGTCGAACTTATCCGCTTCGACATGTCCGAGTACCAGGAGCCGCACACGGTGGCTCGCCTCATCGGGGCGCCTC
CCGGCTACGTGGGCTTCGATCAGGGCGGACTGCTGACCGACGCGGTGGCGAAAAACCCTCACGCAGTGCTGCTGCTCGAC
GAAATCGAGAAGGCGCACCCCGACGTCTACAACATCTTCCTGCAACTGATGGACCACGGCACCCTGACCGACCACGCGGG
CAAAAAGGTGGACGGGCGCGGCCTGATTCTGATTTTCACCACCAATGCCGGGGCCGCCGACGCCAGCCGCCCGGCGCTGG
GTTTCTCGCGAGAGGGCCGTGCCGGAGAGCAGGCCGAGGCCGTCAAGCGCACCTTTACCCCCGAGTTCCGCAACCGCCTG
GACGCCGTAATTTACTTCGCGCCGCTCTCGCGCACGGTGATGACCAGCGTGGTGGACAAGTTCCTGCGTGAGCTGGGCGA
GCAGCTGACCGAGCGCGGCGTGACCCTGACCGTGACCCCCGCCGCCCGCGCCCGCTTGGCCGAACTGGGCTACGACCCGC
TGCTGGGCGCCCGGCCCCTCGCCCGCGTCATCGAGGACAAGCTGGGCCGCCCTTTAGCCGACGAACTGCTGTTCGGGCGT
CTGAAGGACGGCGGCGCGGTGAAGGTGGGCGTGCAGGGCGGGGAATTCAGCTTTGCCGTGAGCTGA
ATGCTTTCCGAACACCTGCAAGCCGCCCTGCAACGCGCCGCCGACCTCGCCCAGGCGGCGGGGCACGAGTACATCACCCA
GGAGCACCTGCTGCTCGCGCTGCTGGGTGACCCCGAGGCCAAAGACGCCCTGAATGCGCTGGGAGCCGATCTAAACGCCC
TGCGCGAAGCCTTGACTGAGCAACTCGCCGAACTCGACATCCTCGACGACCCCGACCCCGACTTCACCCTGGGCGTGCAC
CGCGTGGTGCAGGGCGCCGTGCTGCAACTGCACGCCAGCGGCAAGGGAAAGGAACAGGCCGACGGCGCGCGCGTCCTCGT
CGAACTGCTGGAGGAGGACGACAGCCCCGCCCGCGCCGCGCTTGAGGCGCAGGGCGTGACCCGGCTCGACCTGCTGAACT
ACCTGTCGCACGGCGTGGCGAAAGCGCCGGGCCACAGCCGCGAACGCCGGGTGGCCGGGGTAGACGGCGAATTGACGGCG
GAGGGCGCCCCCGCCGAGGAAAACCCGCTGGAAGCCTACGCGCAGAACCTCACCGAGGCGGCAAAAAACGGAGAGTTCGA
CCCGGTGATTGGCCGGGGCGCCGAACTCGAACGGGTGGTGCACATTCTGGCGCGGCGCGGCAAGAACAACCCGGTTCTGG
TGGGCGAGCCGGGCGTGGGCAAAACCGCGCTGGCTGAGGGGCTGGCACAGCGGGTGGCCGATGGCAAGGCGCCCGGCTTC
CTGCGGGGGGCGTCGGTGTACGCGCTCGACCTGGGGGCACTGTTGGCCGGCACGCGCTACCGGGGCGACTTCGAGGGGCG
GCTCAAGGCCGTGCTGGCCGCGCTCGACGGGCAGAATTCGGTGCTGTTCATAGACGAGCTGCACACCCTGGTCGGCGCCG
GGGCGACAGAGGGCGGCAGTGTGGACGCCGCGAACCTGCTCAAGCCTGCGCTGGCGCGGGGAAAATTACGGGTCATGGGC
GCCACCACGCCTGCCGAACTGCGCCTGCTGGAAAAGGACCGGGCGCTGTGGCGACGTTTTCAGACGGTGGACGTGCCCGA
GCCCTCCGAGGCCGACGCGGTGCAGATTTTGCAAGGCCTCGCGCCTAAGTACGCAGCCCACCACGGCGTCACCTACACTC
CGCCAGCCCTGGAAGCCGCCGTGCGCCTCTCGGCCCGCTACCTGCGCGACCGCTTCCTGCCCGACAAGGCGATTGACGTG
CTCGACGAGGCGGGGGCGGCCCGCAGTAGCACTGGCCAGGGCGGCGAAATAGACGTGCCCGACATCGAAAGCACGGTGGC
ACGCATGGCCCGCGTGCCGGTAGGCGCGGTGAAGGCCGAGGAAGTGCAGAGCCTCGCCACGCTGGAAGCCGACCTCAACC
GCCGGGTTTACGGACAGGAACCCGCGGTAAGCGCAGTGTCCTCGGCGGTCAAGCTCGCCCGCGCGGGCCTGCGCAACCCG
CAAAAGCCGCAGGGGTCGTTCCTGTTTGCCGGGCCGACTGGGGTGGGCAAAACTGAACTCGCCCGCGCGCTGGCCGAGCG
GCTGGGCGTCGAACTTATCCGCTTCGACATGTCCGAGTACCAGGAGCCGCACACGGTGGCTCGCCTCATCGGGGCGCCTC
CCGGCTACGTGGGCTTCGATCAGGGCGGACTGCTGACCGACGCGGTGGCGAAAAACCCTCACGCAGTGCTGCTGCTCGAC
GAAATCGAGAAGGCGCACCCCGACGTCTACAACATCTTCCTGCAACTGATGGACCACGGCACCCTGACCGACCACGCGGG
CAAAAAGGTGGACGGGCGCGGCCTGATTCTGATTTTCACCACCAATGCCGGGGCCGCCGACGCCAGCCGCCCGGCGCTGG
GTTTCTCGCGAGAGGGCCGTGCCGGAGAGCAGGCCGAGGCCGTCAAGCGCACCTTTACCCCCGAGTTCCGCAACCGCCTG
GACGCCGTAATTTACTTCGCGCCGCTCTCGCGCACGGTGATGACCAGCGTGGTGGACAAGTTCCTGCGTGAGCTGGGCGA
GCAGCTGACCGAGCGCGGCGTGACCCTGACCGTGACCCCCGCCGCCCGCGCCCGCTTGGCCGAACTGGGCTACGACCCGC
TGCTGGGCGCCCGGCCCCTCGCCCGCGTCATCGAGGACAAGCTGGGCCGCCCTTTAGCCGACGAACTGCTGTTCGGGCGT
CTGAAGGACGGCGGCGCGGTGAAGGTGGGCGTGCAGGGCGGGGAATTCAGCTTTGCCGTGAGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae TIGR4 |
39.976 |
100 |
0.441 |
| clpC | Streptococcus pneumoniae D39 |
39.853 |
100 |
0.44 |
| clpC | Streptococcus pneumoniae Rx1 |
39.853 |
100 |
0.44 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
38.078 |
100 |
0.422 |
| clpE | Streptococcus mutans UA159 |
45.38 |
81.781 |
0.371 |
| clpA | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
37.279 |
99.19 |
0.37 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
45.439 |
81.377 |
0.37 |
| clpC | Streptococcus mutans UA159 |
43.016 |
85.02 |
0.366 |
| clpE | Streptococcus pneumoniae D39 |
44.098 |
82.321 |
0.363 |
| clpE | Streptococcus pneumoniae TIGR4 |
44.098 |
82.321 |
0.363 |
| clpE | Streptococcus pneumoniae R6 |
44.098 |
82.321 |
0.363 |
| clpE | Streptococcus pneumoniae Rx1 |
44.098 |
82.321 |
0.363 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.006 |
86.1 |
0.362 |