Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLWM1_RS11770 Genome accession   NZ_CP032500
Coordinates   2285593..2286084 (-) Length   163 a.a.
NCBI ID   WP_014570828.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WM1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280593..2291084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLWM1_RS11770 (LLWM1_2249) comX 2285593..2286084 (-) 492 WP_014570828.1 hypothetical protein Regulator
  LLWM1_RS11775 (LLWM1_2250) ezrA 2286340..2288070 (-) 1731 WP_058221369.1 septation ring formation regulator EzrA -
  LLWM1_RS11780 (LLWM1_2251) tsf 2288275..2289303 (-) 1029 WP_003132668.1 translation elongation factor Ts -
  LLWM1_RS11785 (LLWM1_2252) rpsB 2289424..2290191 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19733.63 Da        Isoelectric Point: 5.6148

>NTDB_id=316488 LLWM1_RS11770 WP_014570828.1 2285593..2286084(-) (comX) [Lactococcus lactis subsp. lactis strain WM1]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=316488 LLWM1_RS11770 WP_014570828.1 2285593..2286084(-) (comX) [Lactococcus lactis subsp. lactis strain WM1]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTGTTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGGCGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCTATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.546

100

0.975
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment