Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A7A13_RS13685 Genome accession   NZ_CP038859
Coordinates   2848653..2849390 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 357900     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2843653..2854390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A13_RS13670 (A7A13_13850) clpC 2844107..2846680 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A7A13_RS13675 (A7A13_13855) yfiH 2846810..2847541 (-) 732 WP_096939901.1 purine nucleoside phosphorylase YfiH -
  A7A13_RS13680 (A7A13_13860) rluD 2847538..2848518 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A7A13_RS13685 (A7A13_13865) comL 2848653..2849390 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A7A13_RS13690 (A7A13_13870) raiA 2849661..2850002 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A7A13_RS13695 (A7A13_13875) pheL 2850106..2850153 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A7A13_RS13700 (A7A13_13880) pheA 2850252..2851412 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  A7A13_RS13705 (A7A13_13885) tyrA 2851455..2852576 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A7A13_RS13710 (A7A13_13890) aroF 2852587..2853657 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A7A13_RS13715 (A7A13_13895) yfiL 2853867..2854232 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=316334 A7A13_RS13685 WP_000197686.1 2848653..2849390(+) (comL) [Escherichia coli strain 357900]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=316334 A7A13_RS13685 WP_000197686.1 2848653..2849390(+) (comL) [Escherichia coli strain 357900]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376