Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   D4H51_RS07700 Genome accession   NZ_CP032480
Coordinates   1585989..1587125 (-) Length   378 a.a.
NCBI ID   WP_139544547.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-C-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580989..1592125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H51_RS08735 - 1582215..1582381 (+) 167 Protein_1475 anthranilate synthase component I -
  D4H51_RS07685 - 1582406..1583338 (-) 933 WP_139544544.1 GDP-L-fucose synthase -
  D4H51_RS07690 gmd 1583331..1584476 (-) 1146 WP_139544545.1 GDP-mannose 4,6-dehydratase -
  D4H51_RS07695 - 1584507..1585919 (-) 1413 WP_139544546.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4H51_RS07700 comB10 1585989..1587125 (-) 1137 WP_139544547.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4H51_RS07705 comB9 1587118..1588116 (-) 999 WP_139544548.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4H51_RS07710 comB8 1588116..1588853 (-) 738 WP_139544549.1 virB8 family protein Machinery gene
  D4H51_RS07715 comB7 1588850..1588963 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4H51_RS07720 comB6 1588979..1590034 (-) 1056 WP_139544664.1 P-type conjugative transfer protein TrbL Machinery gene
  D4H51_RS07725 - 1590042..1591046 (-) 1005 WP_139544550.1 PDZ domain-containing protein -
  D4H51_RS07730 - 1591046..1591348 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4H51_RS07735 panD 1591351..1591704 (-) 354 WP_000142278.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42120.68 Da        Isoelectric Point: 9.9021

>NTDB_id=316319 D4H51_RS07700 WP_139544547.1 1585989..1587125(-) (comB10) [Helicobacter pylori strain 19-C-EK1]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=316319 D4H51_RS07700 WP_139544547.1 1585989..1587125(-) (comB10) [Helicobacter pylori strain 19-C-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTTAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCTGTTTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTACAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

97.354

100

0.974

Multiple sequence alignment