Detailed information NTG0316323

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4H51_RS07720
• Genome accession: NZ_CP032480
• Coordinates: 1588979..1590034 (-)
• Length: 351 a.a.
• NCBI ID: WP_139544664.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 19-C-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1583979..1595034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H51_RS07695	-	1584507..1585919 (-)	1413	WP_139544546.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H51_RS07700	comB10	1585989..1587125 (-)	1137	WP_139544547.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H51_RS07705	comB9	1587118..1588116 (-)	999	WP_139544548.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4H51_RS07710	comB8	1588116..1588853 (-)	738	WP_139544549.1	virB8 family protein	Machinery gene
D4H51_RS07715	comB7	1588850..1588963 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H51_RS07720	comB6	1588979..1590034 (-)	1056	WP_139544664.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H51_RS07725	-	1590042..1591046 (-)	1005	WP_139544550.1	PDZ domain-containing protein	-
D4H51_RS07730	-	1591046..1591348 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4H51_RS07735	panD	1591351..1591704 (-)	354	WP_000142278.1	aspartate 1-decarboxylase	-
D4H51_RS07740	-	1591694..1593919 (-)	2226	WP_139544551.1	ATP-dependent Clp protease ATP-binding subunit	-
D4H51_RS07745	-	1593919..1594194 (-)	276	WP_139544552.1	ATP-dependent Clp protease adaptor ClpS	-
D4H51_RS07750	-	1594209..1594622 (-)	414	WP_001023015.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39772.72 Da
• Isoelectric Point: 8.3278

>NTDB_id=316323 D4H51_RS07720 WP_139544664.1 1588979..1590034(-) (comB6) [Helicobacter pylori strain 19-C-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=316323 D4H51_RS07720 WP_139544664.1 1588979..1590034(-) (comB6) [Helicobacter pylori strain 19-C-EK1]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTCTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAATGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98