Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4J00_RS00260 | Genome accession | NZ_CP032478 |
| Coordinates | 59198..59773 (+) | Length | 191 a.a. |
| NCBI ID | WP_139519086.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 25-A-EK9 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 54198..64773
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4J00_RS00235 | uvrD | 54887..56932 (+) | 2046 | WP_201736755.1 | DNA helicase UvrD | - |
| D4J00_RS00240 | flgA | 56929..57585 (+) | 657 | WP_139519083.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4J00_RS00245 | - | 57595..58158 (+) | 564 | WP_000780142.1 | UbiX family flavin prenyltransferase | - |
| D4J00_RS00250 | coaD | 58158..58631 (+) | 474 | WP_139519084.1 | pantetheine-phosphate adenylyltransferase | - |
| D4J00_RS00255 | tmk | 58635..59210 (+) | 576 | WP_139519085.1 | dTMP kinase | - |
| D4J00_RS00260 | comFC | 59198..59773 (+) | 576 | WP_139519086.1 | ComF family protein | Machinery gene |
| D4J00_RS00265 | - | 59806..61844 (+) | 2039 | Protein_52 | N-6 DNA methylase | - |
| D4J00_RS00270 | - | 61841..63043 (+) | 1203 | WP_139519087.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21399.90 Da Isoelectric Point: 8.6728
>NTDB_id=316265 D4J00_RS00260 WP_139519086.1 59198..59773(+) (comFC) [Helicobacter pylori strain 25-A-EK9]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=316265 D4J00_RS00260 WP_139519086.1 59198..59773(+) (comFC) [Helicobacter pylori strain 25-A-EK9]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAGAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTCTTAAAAGG
CTTTTGCCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAGAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTCTTAAAAGG
CTTTTGCCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.751 |
100 |
0.361 |