Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4K17_RS00275 | Genome accession | NZ_CP032477 |
| Coordinates | 62579..63154 (+) | Length | 191 a.a. |
| NCBI ID | WP_139521301.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 169-C-EK8 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57579..68154
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4K17_RS00250 | uvrD | 58270..60315 (+) | 2046 | WP_201737393.1 | DNA helicase UvrD | - |
| D4K17_RS00255 | flgA | 60312..60968 (+) | 657 | WP_139531638.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4K17_RS00260 | - | 60978..61541 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| D4K17_RS00265 | coaD | 61541..62014 (+) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| D4K17_RS00270 | tmk | 62016..62591 (+) | 576 | WP_139521300.1 | dTMP kinase | - |
| D4K17_RS00275 | comFC | 62579..63154 (+) | 576 | WP_139521301.1 | ComF family protein | Machinery gene |
| D4K17_RS00280 | - | 63185..63577 (+) | 393 | Protein_54 | VRR-NUC domain-containing protein | - |
| D4K17_RS00285 | - | 63564..64325 (-) | 762 | WP_001183566.1 | Eco47II family restriction endonuclease | - |
| D4K17_RS00290 | dcm | 64294..65325 (-) | 1032 | WP_000200612.1 | DNA (cytosine-5-)-methyltransferase | - |
| D4K17_RS08245 | - | 65333..65892 (+) | 560 | Protein_57 | restriction endonuclease subunit S | - |
| D4K17_RS08250 | - | 65919..66461 (+) | 543 | WP_338400336.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21189.71 Da Isoelectric Point: 8.9025
>NTDB_id=316245 D4K17_RS00275 WP_139521301.1 62579..63154(+) (comFC) [Helicobacter pylori strain 169-C-EK8]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAELVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAELVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=316245 D4K17_RS00275 WP_139521301.1 62579..63154(+) (comFC) [Helicobacter pylori strain 169-C-EK8]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTACCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGCTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCATATGCCGGGAAAAGCTTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTACCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGCTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCATATGCCGGGAAAAGCTTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |