Detailed information NTG0316215

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4K88_RS07310
• Genome accession: NZ_CP032475
• Coordinates: 1481858..1482994 (-)
• Length: 378 a.a.
• NCBI ID: WP_139532722.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 381-F-EK9
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1476858..1487994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K88_RS07290	hypE	1476952..1477950 (+)	999	WP_139532716.1	hydrogenase expression/formation protein HypE	-
D4K88_RS07865	-	1478054..1478191 (+)	138	WP_161593941.1	hypothetical protein	-
D4K88_RS07295	-	1478271..1479203 (-)	933	WP_139532717.1	GDP-L-fucose synthase	-
D4K88_RS07300	gmd	1479196..1480341 (-)	1146	WP_139532719.1	GDP-mannose 4,6-dehydratase	-
D4K88_RS07305	-	1480376..1481788 (-)	1413	WP_139532720.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K88_RS07310	comB10	1481858..1482994 (-)	1137	WP_139532722.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K88_RS07315	comB9	1482987..1483973 (-)	987	WP_139532724.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K88_RS07320	comB8	1483973..1484710 (-)	738	WP_139532725.1	virB8 family protein	Machinery gene
D4K88_RS07325	comB7	1484707..1484820 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K88_RS07330	comB6	1484836..1485891 (-)	1056	WP_139532727.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K88_RS07335	-	1485899..1486894 (-)	996	WP_139532911.1	PDZ domain-containing protein	-
D4K88_RS07340	-	1486894..1487187 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4K88_RS07345	panD	1487198..1487548 (-)	351	WP_000142242.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42132.84 Da
• Isoelectric Point: 9.9021

>NTDB_id=316215 D4K88_RS07310 WP_139532722.1 1481858..1482994(-) (comB10) [Helicobacter pylori strain 381-F-EK9]
MNKWLKGAIVFVGGFATIVTISLIYHQKPKALLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFINLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=316215 D4K88_RS07310 WP_139532722.1 1481858..1482994(-) (comB10) [Helicobacter pylori strain 381-F-EK9]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCTCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAGACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTATTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCATTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACCAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGTAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTATTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.825	100	0.968