Detailed information NTG0316219

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4K88_RS07330
• Genome accession: NZ_CP032475
• Coordinates: 1484836..1485891 (-)
• Length: 351 a.a.
• NCBI ID: WP_139532727.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 381-F-EK9
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1479836..1490891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K88_RS07305	-	1480376..1481788 (-)	1413	WP_139532720.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K88_RS07310	comB10	1481858..1482994 (-)	1137	WP_139532722.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K88_RS07315	comB9	1482987..1483973 (-)	987	WP_139532724.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K88_RS07320	comB8	1483973..1484710 (-)	738	WP_139532725.1	virB8 family protein	Machinery gene
D4K88_RS07325	comB7	1484707..1484820 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K88_RS07330	comB6	1484836..1485891 (-)	1056	WP_139532727.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K88_RS07335	-	1485899..1486894 (-)	996	WP_139532911.1	PDZ domain-containing protein	-
D4K88_RS07340	-	1486894..1487187 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4K88_RS07345	panD	1487198..1487548 (-)	351	WP_000142242.1	aspartate 1-decarboxylase	-
D4K88_RS07350	-	1487538..1489763 (-)	2226	WP_139532729.1	ATP-dependent Clp protease ATP-binding subunit	-
D4K88_RS07355	-	1489763..1490038 (-)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
D4K88_RS07360	-	1490061..1490474 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39834.92 Da
• Isoelectric Point: 9.4056

>NTDB_id=316219 D4K88_RS07330 WP_139532727.1 1484836..1485891(-) (comB6) [Helicobacter pylori strain 381-F-EK9]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFVLFNY
ALKNPMHFYEFFQKAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNKI

Nucleotide

• Length: 1056 bp

>NTDB_id=316219 D4K88_RS07330 WP_139532727.1 1484836..1485891(-) (comB6) [Helicobacter pylori strain 381-F-EK9]
ATGAAACATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTTAGCGCCAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGTGCTGTTCAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAAAGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATAAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963