Detailed information NTG0316194

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4L09_RS07440
• Genome accession: NZ_CP032474
• Coordinates: 1504244..1505380 (-)
• Length: 378 a.a.
• NCBI ID: WP_139549019.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 476-C-EK5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1499244..1510380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L09_RS07420	hypE	1499350..1500348 (+)	999	WP_139546580.1	hydrogenase expression/formation protein HypE	-
D4L09_RS07425	-	1500661..1501593 (-)	933	WP_139549017.1	GDP-L-fucose synthase	-
D4L09_RS07430	gmd	1501586..1502731 (-)	1146	WP_139542476.1	GDP-mannose 4,6-dehydratase	-
D4L09_RS07435	-	1502756..1504174 (-)	1419	WP_139549018.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L09_RS07440	comB10	1504244..1505380 (-)	1137	WP_139549019.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L09_RS07445	comB9	1505373..1506350 (-)	978	WP_139549020.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L09_RS07450	comB8	1506350..1507087 (-)	738	WP_108297487.1	virB8 family protein	Machinery gene
D4L09_RS07455	comB7	1507084..1507197 (-)	114	WP_139546586.1	comB7 lipoprotein	Machinery gene
D4L09_RS07460	comB6	1507213..1508268 (-)	1056	WP_139546619.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L09_RS07465	-	1508276..1509271 (-)	996	WP_139549037.1	PDZ domain-containing protein	-
D4L09_RS07470	-	1509271..1509564 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4L09_RS07475	panD	1509567..1509920 (-)	354	WP_139542481.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42159.76 Da
• Isoelectric Point: 9.9637

>NTDB_id=316194 D4L09_RS07440 WP_139549019.1 1504244..1505380(-) (comB10) [Helicobacter pylori strain 476-C-EK5]
MNKWLKGAIVFVGGFATIVTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKSVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=316194 D4L09_RS07440 WP_139549019.1 1504244..1505380(-) (comB10) [Helicobacter pylori strain 476-C-EK5]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAATCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GTATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	98.148	100	0.981