Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D4L09_RS00265 Genome accession   NZ_CP032474
Coordinates   59444..60019 (+) Length   191 a.a.
NCBI ID   WP_139541580.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-C-EK5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 57896..72491 59444..60019 within 0


Gene organization within MGE regions


Location: 57896..72491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L09_RS00255 coaD 58406..58879 (+) 474 WP_024111991.1 pantetheine-phosphate adenylyltransferase -
  D4L09_RS00260 tmk 58881..59456 (+) 576 WP_139541579.1 dTMP kinase -
  D4L09_RS00265 comFC 59444..60019 (+) 576 WP_139541580.1 ComF family protein Machinery gene
  D4L09_RS00270 - 60052..60591 (+) 540 Protein_52 N-6 DNA methylase -
  D4L09_RS00275 - 61506..63539 (+) 2034 WP_201737473.1 relaxase/mobilization nuclease domain-containing protein -
  D4L09_RS00280 - 64693..65760 (+) 1068 WP_001120380.1 tyrosine-type recombinase/integrase -
  D4L09_RS00285 - 66074..66877 (-) 804 WP_139541581.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  D4L09_RS00290 - 66849..67100 (-) 252 WP_127919484.1 hypothetical protein -
  D4L09_RS00295 tnpA 67395..67811 (-) 417 WP_000717709.1 IS200/IS605 family transposase -
  D4L09_RS00300 - 67848..69176 (+) 1329 WP_139541554.1 RNA-guided endonuclease TnpB family protein -
  D4L09_RS00305 - 69231..70172 (+) 942 Protein_59 N-6 DNA methylase -
  D4L09_RS08415 - 70169..70821 (+) 653 Protein_60 restriction endonuclease subunit S -
  D4L09_RS08420 - 70848..71405 (+) 558 WP_339326799.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21254.74 Da        Isoelectric Point: 8.6823

>NTDB_id=316183 D4L09_RS00265 WP_139541580.1 59444..60019(+) (comFC) [Helicobacter pylori strain 476-C-EK5]
MRCLTCLKLSFKPLCKNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=316183 D4L09_RS00265 WP_139541580.1 59444..60019(+) (comFC) [Helicobacter pylori strain 476-C-EK5]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCAAAAATTGCTTGAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361

Multiple sequence alignment