Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4L01_RS00280 | Genome accession | NZ_CP032473 |
| Coordinates | 61434..62009 (+) | Length | 191 a.a. |
| NCBI ID | WP_139541580.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 476-A2-EK2 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56434..67009
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L01_RS00255 | uvrD | 57125..59170 (+) | 2046 | WP_201737472.1 | DNA helicase UvrD | - |
| D4L01_RS00260 | flgA | 59167..59823 (+) | 657 | WP_139541578.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4L01_RS00265 | - | 59833..60396 (+) | 564 | WP_040163668.1 | UbiX family flavin prenyltransferase | - |
| D4L01_RS00270 | coaD | 60396..60869 (+) | 474 | WP_024111991.1 | pantetheine-phosphate adenylyltransferase | - |
| D4L01_RS00275 | tmk | 60871..61446 (+) | 576 | WP_139541579.1 | dTMP kinase | - |
| D4L01_RS00280 | comFC | 61434..62009 (+) | 576 | WP_139541580.1 | ComF family protein | Machinery gene |
| D4L01_RS00285 | - | 62042..62581 (+) | 540 | Protein_55 | N-6 DNA methylase | - |
| D4L01_RS00290 | - | 63496..65529 (+) | 2034 | WP_201737473.1 | relaxase/mobilization nuclease domain-containing protein | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21254.74 Da Isoelectric Point: 8.6823
>NTDB_id=316163 D4L01_RS00280 WP_139541580.1 61434..62009(+) (comFC) [Helicobacter pylori strain 476-A2-EK2]
MRCLTCLKLSFKPLCKNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCKNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=316163 D4L01_RS00280 WP_139541580.1 61434..62009(+) (comFC) [Helicobacter pylori strain 476-A2-EK2]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCAAAAATTGCTTGAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCAAAAATTGCTTGAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACTGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |