Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D4Z81_RS04970 Genome accession   NZ_CP032451
Coordinates   950761..951336 (-) Length   191 a.a.
NCBI ID   WP_011543464.1    Uniprot ID   A0AAV5PJF2
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.0207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 945761..956336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4Z81_RS04950 (D4Z81_04950) dnaB 946464..947834 (-) 1371 WP_003623658.1 replicative DNA helicase -
  D4Z81_RS04955 (D4Z81_04955) rplI 947858..948313 (-) 456 WP_014564436.1 50S ribosomal protein L9 -
  D4Z81_RS04960 (D4Z81_04960) - 948336..950357 (-) 2022 WP_076026175.1 DHH family phosphoesterase -
  D4Z81_RS04965 (D4Z81_04965) rpsR 950498..950734 (-) 237 WP_003622127.1 30S ribosomal protein S18 -
  D4Z81_RS04970 (D4Z81_04970) ssb 950761..951336 (-) 576 WP_011543464.1 single-stranded DNA-binding protein Machinery gene
  D4Z81_RS04975 (D4Z81_04975) rpsF 951377..951670 (-) 294 WP_003612647.1 30S ribosomal protein S6 -
  D4Z81_RS04980 (D4Z81_04980) gyrA 951886..954357 (-) 2472 WP_003623653.1 DNA gyrase subunit A -
  D4Z81_RS04985 (D4Z81_04985) gyrB 954370..956331 (-) 1962 WP_003623650.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20582.25 Da        Isoelectric Point: 4.6437

>NTDB_id=315973 D4Z81_RS04970 WP_011543464.1 950761..951336(-) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.0207]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=315973 D4Z81_RS04970 WP_011543464.1 950761..951336(-) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.0207]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGTTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466

Multiple sequence alignment