Detailed information NTG0315942

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: E5Q10_RS10835
• Genome accession: NZ_CP038808
• Coordinates: 2022402..2023499 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain R6CIB17
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2017402..2028499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5Q10_RS10810 (E5Q10_10805)	pgsA	2017923..2018468 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
E5Q10_RS10815 (E5Q10_10810)	rodZ	2018479..2019300 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
E5Q10_RS10820 (E5Q10_10815)	yfmH	2019342..2020625 (-)	1284	WP_000170194.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
E5Q10_RS10825 (E5Q10_10820)	yfmF	2020622..2021872 (-)	1251	WP_000424263.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
E5Q10_RS10830 (E5Q10_10825)	yaaA	2022031..2022399 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
E5Q10_RS10835 (E5Q10_10830)	recF	2022402..2023499 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
E5Q10_RS10840 (E5Q10_10835)	guaB	2023550..2025028 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
E5Q10_RS10845 (E5Q10_10840)	trpS	2025180..2026205 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
E5Q10_RS10850 (E5Q10_10845)	-	2026411..2028033 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=315942 E5Q10_RS10835 WP_000266662.1 2022402..2023499(+) (recF) [Streptococcus pneumoniae strain R6CIB17]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=315942 E5Q10_RS10835 WP_000266662.1 2022402..2023499(+) (recF) [Streptococcus pneumoniae strain R6CIB17]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46