Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   TFGB2_RS06915 Genome accession   NZ_CP032429
Coordinates   1161185..1161589 (-) Length   134 a.a.
NCBI ID   WP_262347358.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-B2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1156185..1166589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGB2_RS06880 (TFGB2_01216) - 1156707..1157129 (-) 423 WP_003691751.1 very short patch repair endonuclease -
  TFGB2_RS14000 - 1157135..1157731 (-) 597 WP_012503916.1 TIGR02391 family protein -
  TFGB2_RS14005 - 1157921..1158778 (-) 858 WP_012503917.1 ATP-binding protein -
  TFGB2_RS06890 (TFGB2_01219) - 1158792..1159226 (-) 435 WP_229684538.1 DNA cytosine methyltransferase -
  TFGB2_RS06895 - 1159160..1159750 (-) 591 WP_080229150.1 DNA cytosine methyltransferase -
  TFGB2_RS06900 (TFGB2_01220) - 1160125..1160271 (+) 147 WP_003691757.1 hypothetical protein -
  TFGB2_RS06910 (TFGB2_01222) comP 1160648..1161097 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  TFGB2_RS06915 (TFGB2_01224) comE 1161185..1161589 (-) 405 WP_262347358.1 helix-hairpin-helix domain-containing protein Machinery gene
  TFGB2_RS14010 - 1161684..1161800 (-) 117 Protein_1207 competence protein ComE -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14123.00 Da        Isoelectric Point: 10.6701

>NTDB_id=315780 TFGB2_RS06915 WP_262347358.1 1161185..1161589(-) (comE) [Neisseria gonorrhoeae strain TFG-B2]
MVPFEPGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAI
AEYRAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 405 bp        

>NTDB_id=315780 TFGB2_RS06915 WP_262347358.1 1161185..1161589(-) (comE) [Neisseria gonorrhoeae strain TFG-B2]
ATCGTTCCCTTTGAGCCGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTT
GTTTGCAACCCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTG
CGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATT
GCGGAATACCGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCT
GGCGAAGCTGAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAA
AATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

95.522

0.955
  comE Neisseria gonorrhoeae MS11

100

95.522

0.955
  comE Neisseria gonorrhoeae MS11

100

95.522

0.955
  comE Neisseria gonorrhoeae MS11

100

95.522

0.955

Multiple sequence alignment