Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E5M00_RS07040 Genome accession   NZ_CP038791
Coordinates   1389325..1390062 (-) Length   245 a.a.
NCBI ID   WP_001556171.1    Uniprot ID   -
Organism   Escherichia coli strain PF9285     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384325..1395062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5M00_RS07010 (E5M00_07010) yfiL 1384483..1384848 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  E5M00_RS07015 (E5M00_07015) aroF 1385058..1386128 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E5M00_RS07020 (E5M00_07020) tyrA 1386139..1387260 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E5M00_RS07025 (E5M00_07025) pheA 1387303..1388463 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  E5M00_RS07030 (E5M00_07030) pheL 1388562..1388609 (-) 48 WP_010723158.1 phe operon leader peptide -
  E5M00_RS07035 (E5M00_07035) raiA 1388713..1389054 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E5M00_RS07040 (E5M00_07040) comL 1389325..1390062 (-) 738 WP_001556171.1 outer membrane protein assembly factor BamD Machinery gene
  E5M00_RS07045 (E5M00_07045) rluD 1390197..1391177 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E5M00_RS07050 (E5M00_07050) yfiH 1391174..1391905 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  E5M00_RS07055 (E5M00_07055) clpC 1392035..1394608 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27857.45 Da        Isoelectric Point: 6.4874

>NTDB_id=315775 E5M00_RS07040 WP_001556171.1 1389325..1390062(-) (comL) [Escherichia coli strain PF9285]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYVYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=315775 E5M00_RS07040 WP_001556171.1 1389325..1390062(-) (comL) [Escherichia coli strain PF9285]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGTCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371