Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   E5E91_RS09910 Genome accession   NZ_CP038663
Coordinates   1990353..1991564 (+) Length   403 a.a.
NCBI ID   WP_010888606.1    Uniprot ID   Q9RSZ6
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985353..1996564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5E91_RS09880 (E5E91_10130) - 1985651..1986445 (+) 795 WP_010888600.1 enoyl-ACP reductase FabI -
  E5E91_RS09885 (E5E91_10135) - 1986654..1987292 (-) 639 WP_027479823.1 nitroreductase family protein -
  E5E91_RS09890 (E5E91_10140) - 1987373..1987732 (+) 360 WP_010888602.1 winged helix-turn-helix transcriptional regulator -
  E5E91_RS09895 (E5E91_10145) - 1987803..1988288 (-) 486 WP_010888603.1 GreA/GreB family elongation factor -
  E5E91_RS09900 (E5E91_10150) - 1988484..1989668 (+) 1185 WP_051618904.1 MFS transporter -
  E5E91_RS09905 (E5E91_10155) clpP 1989742..1990356 (+) 615 WP_010888605.1 ATP-dependent Clp protease proteolytic subunit Regulator
  E5E91_RS09910 (E5E91_10160) clpX 1990353..1991564 (+) 1212 WP_010888606.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  E5E91_RS09915 (E5E91_10165) lon 1991711..1994152 (+) 2442 WP_027479826.1 endopeptidase La -
  E5E91_RS09920 (E5E91_10170) - 1994205..1995089 (-) 885 WP_010888608.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 44283.48 Da        Isoelectric Point: 4.7712

>NTDB_id=315732 E5E91_RS09910 WP_010888606.1 1990353..1991564(+) (clpX) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MTRATADRCSFCGRQHPQIAQLIEAPGRAAFICNECAERAFDLVKQQRKEAGSEFSLDELPSAKEIKAYLDEFVIGQDEA
KKALAVAVVSHYHRLSNPDAGLQKSNILLIGPTGTGKTLLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQA
AEYDVAAAERGIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQVDTRNILFIVG
GAFESMSEIARARTNVRAVGFGAEHKGEEKEEVRFLPEDLVKFGLIPEFVGRLPLVVQLQDLDEDALIRILTEPQGAIIK
QYQALFGFQGVDLTFSEEALQEVAHRAKERKTGARGLRAVLEKSMTDLLFELPRDDVKEIRFEAEYIDDPLKALESKGLK
KSA

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=315732 E5E91_RS09910 WP_010888606.1 1990353..1991564(+) (clpX) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGACCCGCGCCACCGCCGACCGCTGCTCGTTTTGCGGACGCCAGCACCCGCAGATCGCCCAGCTCATCGAAGCGCCGGG
CCGCGCCGCCTTTATCTGCAACGAGTGCGCCGAGCGCGCCTTTGACCTCGTCAAGCAGCAGCGCAAGGAAGCGGGCAGCG
AGTTCAGCCTCGACGAACTGCCGAGCGCCAAGGAAATCAAGGCGTACCTCGACGAGTTCGTGATTGGACAGGACGAAGCG
AAGAAAGCGCTCGCCGTCGCCGTGGTCAGCCACTACCACCGCCTCTCGAACCCTGACGCCGGACTGCAAAAGAGCAACAT
CCTCTTGATCGGGCCGACCGGCACCGGCAAGACGCTGCTCGCCCAGAGCCTCGCGGAAATGCTCGAAGTGCCCTTCGCCA
TCGCCGACGCCACCACGCTGACCGAAGCCGGGTATGTGGGCGACGACGTGGAGAACGTGATTGTCCGCCTGCTGCAAGCC
GCCGAGTACGACGTGGCCGCCGCCGAGCGCGGAATCATCTACGTGGACGAAATCGACAAGATCGCCCGCAAGTCCGAAGG
CACCTCGATCACCCGCGACGTGAGCGGCGAAGGCGTGCAGCAAGCGCTCCTCAAGATCATCGAAGGGACCGTGGCGCAAG
TTCCCCCGCAGGGGGGTCGCAAGCACCCACAGCAGGAACTCGTGCAGGTGGACACCCGCAACATCCTGTTCATCGTGGGC
GGCGCCTTCGAGAGCATGAGCGAAATCGCCCGCGCCCGCACCAACGTCCGCGCCGTGGGCTTCGGCGCCGAGCACAAGGG
CGAGGAAAAGGAAGAAGTGCGCTTCCTTCCCGAAGACCTCGTGAAGTTCGGGTTGATTCCCGAGTTCGTGGGCCGTCTGC
CGCTCGTGGTGCAGCTCCAAGACCTCGACGAGGACGCCCTGATCCGCATCCTGACCGAACCGCAGGGCGCCATCATCAAG
CAGTACCAAGCGCTGTTCGGCTTTCAGGGTGTGGACCTGACCTTCAGCGAAGAAGCGCTGCAAGAAGTCGCCCACCGCGC
CAAGGAGCGCAAGACCGGGGCGCGTGGCCTGCGCGCCGTCCTCGAAAAATCGATGACCGATCTGCTGTTCGAACTACCCC
GCGACGACGTGAAGGAAATTCGTTTCGAGGCGGAGTATATTGACGACCCACTGAAGGCACTTGAGTCTAAGGGACTCAAA
AAGTCTGCATAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(302-373)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-46)

AAA domain (Cdc48 subfamily) (AAA_2)

(103-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RSZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.623

96.03

0.553
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.367

99.504

0.531