Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SG_RS17955 Genome accession   NC_011274
Coordinates   3719839..3721359 (+) Length   506 a.a.
NCBI ID   WP_000050227.1    Uniprot ID   B5RFT7
Organism   Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3714839..3726359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SG_RS17935 (SG3539) ilvE 3716397..3717326 (-) 930 WP_000208530.1 branched-chain-amino-acid transaminase -
  SG_RS17940 (SG3540) ilvM 3717344..3717607 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  SG_RS17945 (SG3541) ilvG 3717604..3719250 (-) 1647 WP_001012569.1 acetolactate synthase 2 catalytic subunit -
  SG_RS25025 ilvX 3719253..3719303 (-) 51 WP_192930503.1 peptide IlvX -
  SG_RS17950 ilvL 3719389..3719487 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SG_RS17955 (SG3542) comM 3719839..3721359 (+) 1521 WP_000050227.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SG_RS17960 (SG3543) maoP 3721384..3721722 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  SG_RS17965 (SG3544) hdfR 3721829..3722677 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55052.24 Da        Isoelectric Point: 8.7603

>NTDB_id=31560 SG_RS17955 WP_000050227.1 3719839..3721359(+) (comM) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLTASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASSTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTIRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLRHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=31560 SG_RS17955 WP_000050227.1 3719839..3721359(+) (comM) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91]
ATGTCACTGGCGATTGTTCATACTCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGCGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGACCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGTCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAA
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGTCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACAATACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCGCCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5RFT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

57.957

100

0.583
  comM Vibrio cholerae strain A1552

58.416

99.802

0.583
  comM Vibrio campbellii strain DS40M4

56.944

99.605

0.567
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

100

0.427

Multiple sequence alignment