Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   D5R90_RS06085 Genome accession   NZ_CP032400
Coordinates   1224980..1226026 (+) Length   348 a.a.
NCBI ID   WP_003102192.1    Uniprot ID   -
Organism   Streptococcus iniae strain YM011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219980..1231026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R90_RS06070 (D5R90_06070) - 1221282..1222937 (+) 1656 WP_003102201.1 peptide ABC transporter substrate-binding protein -
  D5R90_RS06075 (D5R90_06075) - 1223012..1223926 (+) 915 WP_003102198.1 ABC transporter permease -
  D5R90_RS06080 (D5R90_06080) - 1223936..1224967 (+) 1032 WP_003102195.1 ABC transporter permease -
  D5R90_RS06085 (D5R90_06085) oppD 1224980..1226026 (+) 1047 WP_003102192.1 ABC transporter ATP-binding protein Regulator
  D5R90_RS06090 (D5R90_06090) amiF 1226026..1226961 (+) 936 WP_003102190.1 ABC transporter ATP-binding protein Regulator
  D5R90_RS06095 (D5R90_06095) rnjA 1227050..1228732 (-) 1683 WP_003102188.1 ribonuclease J1 -
  D5R90_RS06100 (D5R90_06100) - 1228734..1228964 (-) 231 WP_003102185.1 DNA-dependent RNA polymerase subunit epsilon -
  D5R90_RS06105 (D5R90_06105) - 1229278..1230231 (+) 954 WP_003098612.1 IS30 family transposase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38483.08 Da        Isoelectric Point: 5.1457

>NTDB_id=315448 D5R90_RS06085 WP_003102192.1 1224980..1226026(+) (oppD) [Streptococcus iniae strain YM011]
MTTETILNVKNLHVDFKTYAGDVKAIRDINFELKKGETLAIVGESGSGKSVTTRTLMGLNASNARISGDIDFKGKKLNDL
KEEDWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHEKISKQEALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQNQILKLMKELQSQISSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEQEPPMFKVSETHYAATWLL
DERAPEVTPPAPILKRWAKWKKKEGGQA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=315448 D5R90_RS06085 WP_003102192.1 1224980..1226026(+) (oppD) [Streptococcus iniae strain YM011]
ATGACAACTGAAACAATTTTAAATGTTAAAAACCTCCATGTTGATTTTAAAACCTATGCTGGAGATGTTAAAGCCATTCG
TGACATTAATTTTGAGCTTAAAAAAGGGGAGACTCTTGCTATTGTTGGGGAATCTGGTTCAGGTAAGTCTGTAACCACAC
GTACCCTAATGGGGCTAAATGCTTCAAATGCTAGAATCAGTGGTGACATTGATTTCAAAGGTAAAAAACTTAATGATTTA
AAAGAAGAAGACTGGGTTAAGGTTCGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTTGACCCAAC
AATGAAGATTGGAATGCAAATTGCTGAAGCCATCTTAATTCATGAAAAAATTTCAAAACAAGAAGCTTTGTCTCGTGCTT
TAGAATTGATGCATCAAGTTGGTATTCCTAATGCAGAAGAACATATCAATGATTACCCACATCAATGGTCGGGTGGTATG
AGGCAACGGGCTGTTATTGCCATTGCCTTAGCTGCTAATCCGGAAATTCTAATTGCAGATGAACCAACCACAGCACTGGA
TGTGACAATACAGAACCAAATCTTGAAATTGATGAAAGAATTGCAATCGCAAATCTCATCATCTATCATCTTCATCACCC
ATGATTTAGGTGTGGTTGCTGGTATGGCTGACCGTGTTGCTGTTATGTATGCTGGTAAGATTGTTGAGTATGGTACTGTA
GATGAAGTCTTCTACAATCCACAACACCCTTACACTTGGGGTTTGTTGAATTCAATGCCAACCACTGATACAGAAGCAGG
CAGTTTGGAATCTATTCCAGGAACGCCACCTGATCTTTTGAACCCTCCTAAAGGTGATGCTTTTGCTGCTCGTAATGAGT
TTGCACTTGATATTGACCACGAACAAGAGCCTCCGATGTTTAAAGTAAGTGAAACGCACTATGCAGCTACTTGGTTATTA
GATGAGCGTGCGCCAGAGGTGACGCCACCTGCACCAATTCTTAAACGCTGGGCGAAATGGAAGAAAAAAGAAGGGGGACA
AGCTTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.71

99.138

0.79
  amiE Streptococcus salivarius strain HSISS4

56.193

95.115

0.534
  amiE Streptococcus thermophilus LMG 18311

55.891

95.115

0.532
  amiE Streptococcus thermophilus LMD-9

55.891

95.115

0.532

Multiple sequence alignment