Detailed information NTG0315449

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: D5R90_RS06090
• Genome accession: NZ_CP032400
• Coordinates: 1226026..1226961 (+)
• Length: 311 a.a.
• NCBI ID: WP_003102190.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain YM011
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1221026..1231961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R90_RS06070 (D5R90_06070)	-	1221282..1222937 (+)	1656	WP_003102201.1	peptide ABC transporter substrate-binding protein	-
D5R90_RS06075 (D5R90_06075)	-	1223012..1223926 (+)	915	WP_003102198.1	ABC transporter permease	-
D5R90_RS06080 (D5R90_06080)	-	1223936..1224967 (+)	1032	WP_003102195.1	ABC transporter permease	-
D5R90_RS06085 (D5R90_06085)	oppD	1224980..1226026 (+)	1047	WP_003102192.1	ABC transporter ATP-binding protein	Regulator
D5R90_RS06090 (D5R90_06090)	amiF	1226026..1226961 (+)	936	WP_003102190.1	ABC transporter ATP-binding protein	Regulator
D5R90_RS06095 (D5R90_06095)	rnjA	1227050..1228732 (-)	1683	WP_003102188.1	ribonuclease J1	-
D5R90_RS06100 (D5R90_06100)	-	1228734..1228964 (-)	231	WP_003102185.1	DNA-dependent RNA polymerase subunit epsilon	-
D5R90_RS06105 (D5R90_06105)	-	1229278..1230231 (+)	954	WP_003098612.1	IS30 family transposase	-
D5R90_RS06110 (D5R90_06110)	tsaB	1230337..1231029 (+)	693	WP_003102183.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
D5R90_RS06115 (D5R90_06115)	rimI	1231031..1231456 (+)	426	WP_003102181.1	ribosomal protein S18-alanine N-acetyltransferase	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35198.16 Da
• Isoelectric Point: 6.4061

>NTDB_id=315449 D5R90_RS06090 WP_003102190.1 1226026..1226961(+) (amiF) [Streptococcus iniae strain YM011]
MTAERKKLVELKNVSLSFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDITDGEIIFNDKEVSQL
KGRDLRDFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLAKDKESREAKVQELLDLVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQAEKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGSSDD
VYNNPIHPYTRSLLSAIPEPDPDKERQRVAEIYDSSIELDGQEREMREITPNHFVLSTEEEAAQYRLNLKK

Nucleotide

• Length: 936 bp

>NTDB_id=315449 D5R90_RS06090 WP_003102190.1 1226026..1226961(+) (amiF) [Streptococcus iniae strain YM011]
ATGACTGCCGAACGTAAAAAATTAGTTGAGCTAAAAAATGTCTCTTTGTCCTTTAACAAAGGCAAAAAAAATGAAGTAAA
AGCTATTAATAATGTCAGCTTTGATATTTATGAAGGCGAAGTTTTTGGACTTGTTGGTGAATCTGGTTCAGGGAAAACCA
CTGTTGGTCGTGCCATTTTAAAACTTTATGATATTACTGATGGTGAAATCATCTTTAATGATAAAGAGGTATCTCAATTA
AAAGGACGTGATTTACGAGATTTCCGCAAAGATGCACAAATGATTTTCCAAGACCCACAAGCCAGTCTTAATGGTCGTAT
GAAAATTAGAGACATTGTTGCTGAAGGTCTCGACATTCATGGTTTAGCTAAAGATAAAGAAAGCCGTGAGGCTAAAGTTC
AAGAATTACTTGACCTTGTTGGTTTAAACAAAGACCATGTGACACGTTACCCACATGAGTTCTCTGGTGGACAACGTCAG
CGTATTGGGATTGCACGGGCCTTGGCTGTTAAACCTAAATTTATCATTGCAGATGAGCCAATCTCAGCTTTAGATGTATC
TATTCAAGCCCAAGTTGTGAATTTGATGCAAAGATTGCAAGCTGAAAAAGGACTGACTTACCTTTTCATTGCCCATGATT
TGTCGATGGTTAAATACATTTCAGATCGTATCGGTGTTATGCACTGGGGAAAAATGTTGGAAATTGGTAGTTCCGATGAC
GTTTACAATAATCCAATCCATCCTTACACAAGAAGTCTCTTATCAGCAATTCCAGAACCAGATCCTGATAAGGAACGTCA
ACGTGTTGCTGAAATCTATGACTCAAGTATAGAATTAGATGGACAAGAAAGAGAGATGCGTGAAATTACACCAAATCACT
TTGTTCTTTCAACTGAAGAAGAAGCTGCTCAATACAGGCTAAATCTTAAAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.785	97.428	0.534
amiF	Streptococcus thermophilus LMG 18311	54.455	97.428	0.531
amiF	Streptococcus salivarius strain HSISS4	54.125	97.428	0.527